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Lj6g3v1138510.1

Overview

Field Value
Gene ID Lj6g3v1138510
Transcript ID Lj6g3v1138510.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B-like [Glycine max] gi|356556436|ref|XP_003546532.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 11 11 – –
Phobius
TRANSMEMBRANE
12 32 21 – –
TMHMM
TMhelix
13 32 20 – –
CDD
cd15799
18 174 157 3.54E-38 –
SMART
SM00856
32 158 127 4.40E-09
IPR006501
Phobius
NON_CYTOPLASMIC_DOMAIN
33 522 490 – –
PANTHER
PTHR31707:SF10
37 522 486 0 –
PANTHER
PTHR31707
37 522 486 0 –
SUPERFAMILY
SSF101148
68 156 89 4.71E-14
IPR006501
Gene3D
G3DSA:1.20.140.40
75 153 79 1.00E-13
IPR006501
Pfam
PF04043
80 152 73 2.30E-12
IPR006501
Gene3D
G3DSA:2.160.20.10
206 518 313 7.30E-121
IPR012334
SUPERFAMILY
SSF51126
207 519 313 3.77E-113
IPR011050
Pfam
PF01095
207 506 300 1.60E-147
IPR000070
ProSitePatterns
PS00503
351 360 10 –
IPR033131

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004857
Molecular function Enzyme inhibitor activity Binds to and stops, prevents or reduces the activity of an enzyme.
Subterm of
GO:0030599
Molecular function Pectinesterase activity Catalysis of the reaction: pectin + n H2O = n methanol + pectate.
Subterm of
GO:0042545
Biological process Cell wall modification The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj6g3v1138510.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1138510.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.