Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj6g3v1211620.1

Overview

Field Value
Gene ID Lj6g3v1211620
Transcript ID Lj6g3v1211620.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like [Glycine max] gi|356577033|ref|XP_003556634.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24015
1 328 328 9.10E-142 –
Pfam
PF13041
8 55 48 1.80E-11
IPR002885
ProSiteProfiles
PS51375
9 43 35 12.726
IPR002885
Gene3D
G3DSA:1.25.40.10
12 228 217 2.80E-08
IPR011990
TIGRFAM
TIGR00756
12 44 33 2.60E-07
IPR002885
ProSiteProfiles
PS51375
44 78 35 10.775
IPR002885
TIGRFAM
TIGR00756
46 80 35 1.60E-06
IPR002885
ProSiteProfiles
PS51375
79 113 35 10.863
IPR002885
TIGRFAM
TIGR00756
82 115 34 0.002
IPR002885
Pfam
PF13041
82 126 45 1.20E-09
IPR002885
SUPERFAMILY
SSF81901
90 302 213 4.18E-07 –
ProSiteProfiles
PS51375
114 148 35 12.112
IPR002885
TIGRFAM
TIGR00756
117 150 34 1.00E-07
IPR002885
ProSiteProfiles
PS51375
149 183 35 11.367
IPR002885
Pfam
PF13041
152 196 45 2.20E-13
IPR002885
TIGRFAM
TIGR00756
152 185 34 5.20E-07
IPR002885
ProSiteProfiles
PS51375
184 218 35 12.847
IPR002885
TIGRFAM
TIGR00756
186 218 33 1.10E-07
IPR002885
ProSiteProfiles
PS51375
219 253 35 9.712
IPR002885
Pfam
PF01535
221 251 31 6.00E-05
IPR002885
TIGRFAM
TIGR00756
221 253 33 0.0011
IPR002885
Pfam
PF13041
261 310 50 1.30E-17
IPR002885
ProSiteProfiles
PS51375
262 296 35 13.351
IPR002885
TIGRFAM
TIGR00756
264 298 35 1.80E-10
IPR002885
ProSiteProfiles
PS51375
297 327 31 8.155
IPR002885
TIGRFAM
TIGR00756
299 320 22 5.50E-04
IPR002885
PANTHER
PTHR24015
346 377 32 9.10E-142 –
ProSiteProfiles
PS51375
347 377 31 9.175
IPR002885
Pfam
PF01535
350 376 27 1.90E-04
IPR002885
TIGRFAM
TIGR00756
350 377 28 0.002
IPR002885
Gene3D
G3DSA:1.25.40.10
435 467 33 2.80E-08
IPR011990
ProSiteProfiles
PS51375
437 471 35 5.02
IPR002885

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj6g3v1211620.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1211620.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.