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Field | Value |
---|---|
Gene ID | Lj6g3v1226320 |
Transcript ID | Lj6g3v1226320.1 |
Lotus japonicus genome version | MG20 v3.0 |
Description | PREDICTED: probable U3 small nucleolar RNA-associated protein 11-like [Glycine max] gi|356524892|ref|XP_003531062.1| |
Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 29 | 29 | – | – | |
PIRSF | 1 | 202 | 202 | 2.30E-56 | ||
PANTHER | 2 | 202 | 201 | 1.90E-83 | ||
Pfam | 10 | 201 | 192 | 1.20E-55 | ||
Coils | 103 | 126 | 24 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | RRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. | ||
Cellular component | Small-subunit processome | A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins. |
Expression pattern of Lj6g3v1226320.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1226320.1, powered by CORGI.
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