Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj6g3v1300850.1

Overview

Field Value
Gene ID Lj6g3v1300850
Transcript ID Lj6g3v1300850.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: homeobox-leucine zipper protein HAT14-like [Glycine max] gi|356556274|ref|XP_003546451.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
21 86 66 – –
Gene3D
G3DSA:1.10.10.60
67 139 73 1.70E-17
IPR009057
PANTHER
PTHR24326
74 223 150 1.60E-55 –
PANTHER
PTHR24326:SF227
74 223 150 1.60E-55 –
SUPERFAMILY
SSF46689
74 142 69 2.82E-18
IPR009057
ProSiteProfiles
PS50071
81 141 61 17.022
IPR001356
SMART
SM00389
83 145 63 2.90E-15
IPR001356
Pfam
PF00046
85 139 55 2.20E-15
IPR001356
CDD
cd00086
85 142 58 1.81E-14 –
ProSitePatterns
PS00027
116 139 24 –
IPR017970
Coils
Coil
140 174 35 – –
SMART
SM00340
141 184 44 5.60E-16
IPR003106

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj6g3v1300850.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1300850.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.