Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj6g3v1303020.1

Overview

Field Value
Gene ID Lj6g3v1303020
Transcript ID Lj6g3v1303020.1
Lotus japonicus genome version MG20 v3.0
Description Disease resistance RPP8-like protein [Medicago truncatula] gi|357449695|ref|XP_003595124.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
CDD
cd14798
2 130 129 1.04E-31 –
PANTHER
PTHR23155:SF402
3 784 782 4.10E-280 –
PANTHER
PTHR23155
3 784 782 4.10E-280 –
Coils
Coil
31 51 21 – –
SUPERFAMILY
SSF52540
151 440 290 4.84E-65
IPR027417
Pfam
PF00931
172 465 294 7.00E-74
IPR002182
Gene3D
G3DSA:3.40.50.300
175 321 147 1.20E-12
IPR027417
PRINTS
PR00364
190 205 16 4.70E-19 –
PRINTS
PR00364
269 283 15 4.70E-19 –
PRINTS
PR00364
372 386 15 4.70E-19 –
SUPERFAMILY
SSF52058
511 894 384 9.35E-41
IPR032675
Gene3D
G3DSA:3.80.10.10
553 720 168 1.50E-17
IPR032675
Gene3D
G3DSA:3.80.10.10
721 894 174 8.40E-12
IPR032675
PANTHER
PTHR23155:SF402
834 883 50 4.10E-280 –
PANTHER
PTHR23155
834 883 50 4.10E-280 –
PRINTS
PR00364
858 874 17 4.70E-19 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0043531
Molecular function ADP binding Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate.
Subterm of

Genome browser

LORE1 insertions 17

Expression data

Expression pattern

Expression pattern of Lj6g3v1303020.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1303020.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.