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Lj6g3v1319710.1

Overview

Field Value
Gene ID Lj6g3v1319710
Transcript ID Lj6g3v1319710.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: 60S ribosomal protein L7-4-like [Cicer arietinum] gi|502085817|ref|XP_004488017.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11524
1 245 245 7.60E-176 –
Pfam
PF08079
11 82 72 4.00E-26
IPR012988
TIGRFAM
TIGR01310
12 245 234 1.00E-101
IPR005998
Coils
Coil
51 75 25 – –
CDD
cd01657
86 245 160 3.14E-92 –
SUPERFAMILY
SSF55129
86 245 160 1.36E-60
IPR016082
Pfam
PF00327
87 137 51 1.00E-21
IPR016082
Gene3D
G3DSA:3.30.1390.20
87 142 56 3.80E-38
IPR016082
ProSitePatterns
PS00634
105 137 33 –
IPR018038
Gene3D
G3DSA:3.30.1390.20
206 245 40 3.80E-38
IPR016082

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000463
Biological process Maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Any process involved in the maturation of a precursor Large SubUnit (LSU) ribosomal RNA (rRNA) molecule into a mature LSU-rRNA molecule from the pre-rRNA molecule originally produced as a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, 5.8S rRNA, and Large Subunit (LSU) in that order from 5' to 3' along the primary transcript.
Subterm of
GO:0003735
Molecular function Structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
Subterm of
GO:0022625
Cellular component Cytosolic large ribosomal subunit The large subunit of a ribosome located in the cytosol.
Subterm of
Part of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj6g3v1319710.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1319710.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.