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Lj6g3v1382260.1

Overview

Field Value
Gene ID Lj6g3v1382260
Transcript ID Lj6g3v1382260.1
Lotus japonicus genome version MG20 v3.0
Description DH [Medicago sativa] gi|118574850|gb|ABL07003.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24031:SF313
21 406 386 1.40E-264 –
PANTHER
PTHR24031
21 406 386 1.40E-264 –
Gene3D
G3DSA:3.40.50.300
24 245 222 6.10E-70
IPR027417
ProSiteProfiles
PS51195
33 61 29 10.889
IPR014014
CDD
cd00268
35 235 201 2.34E-93 –
SMART
SM00487
52 249 198 4.10E-53
IPR014001
Pfam
PF00270
58 220 163 4.10E-40
IPR011545
ProSiteProfiles
PS51192
64 234 171 24.995
IPR014001
SUPERFAMILY
SSF52540
101 389 289 3.45E-72
IPR027417
ProSiteProfiles
PS51194
245 406 162 26.991
IPR001650
CDD
cd00079
246 375 130 4.26E-44 –
Gene3D
G3DSA:3.40.50.300
246 403 158 3.20E-58
IPR027417
Pfam
PF00271
259 367 109 1.50E-31
IPR001650
SMART
SM00490
286 367 82 7.90E-35
IPR001650

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj6g3v1382260.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1382260.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.