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Lj6g3v1422220.1

Overview

Field Value
Gene ID Lj6g3v1422220
Transcript ID Lj6g3v1422220.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: sucrose nonfermenting 4-like protein-like [Glycine max] gi|356556126|ref|XP_003546378.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13780
19 491 473 0 –
PANTHER
PTHR13780:SF43
19 491 473 0 –
Pfam
PF16561
21 103 83 4.40E-24
IPR032640
SUPERFAMILY
SSF81296
21 102 82 4.06E-21
IPR014756
CDD
cd02859
22 100 79 1.61E-28 –
SUPERFAMILY
SSF54631
158 328 171 1.89E-25 –
ProSiteProfiles
PS51371
171 233 63 9.727
IPR000644
CDD
cd04618
176 316 141 2.78E-24 –
Gene3D
G3DSA:3.10.580.10
177 321 145 1.20E-07 –
SMART
SM00116
177 226 50 0.08
IPR000644
Gene3D
G3DSA:3.10.580.10
354 489 136 1.80E-14 –
ProSiteProfiles
PS51371
355 418 64 9.683
IPR000644
SUPERFAMILY
SSF54631
356 490 135 2.95E-21 –
Pfam
PF00571
357 403 47 6.10E-06
IPR000644
SMART
SM00116
359 407 49 1.80E-05
IPR000644
ProSiteProfiles
PS51371
437 491 55 8.816
IPR000644
SMART
SM00116
441 490 50 0.012
IPR000644
Pfam
PF00571
444 490 47 8.10E-08
IPR000644

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj6g3v1422220.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1422220.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.