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Lj6g3v1450720.1

Overview

Field Value
Gene ID Lj6g3v1450720
Transcript ID Lj6g3v1450720.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: condensin-2 complex subunit D3-like [Glycine max] gi|356529537|ref|XP_003533347.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR14222:SF1
56 1233 1178 0 –
PANTHER
PTHR14222
56 1233 1178 0
IPR026971
MobiDBLite
mobidb-lite
115 143 29 – –
Gene3D
G3DSA:1.25.10.10
204 600 397 8.10E-16
IPR011989
SUPERFAMILY
SSF48371
286 521 236 1.06E-27
IPR016024
SUPERFAMILY
SSF48371
749 999 251 1.06E-27
IPR016024
MobiDBLite
mobidb-lite
771 792 22 – –
Gene3D
G3DSA:1.25.10.10
802 803 2 8.10E-16
IPR011989
Gene3D
G3DSA:1.25.10.10
880 997 118 8.10E-16
IPR011989
Pfam
PF12717
896 1073 178 3.30E-25
IPR032682
MobiDBLite
mobidb-lite
1010 1030 21 – –
SUPERFAMILY
SSF48371
1145 1169 25 1.06E-27
IPR016024
Coils
Coil
1167 1187 21 – –
MobiDBLite
mobidb-lite
1208 1250 43 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0007076
Biological process Mitotic chromosome condensation The cell cycle process in which chromatin structure is compacted prior to and during mitosis in eukaryotic cells.
Subterm of
Part of

Genome browser

LORE1 insertions 19

Expression data

Expression pattern

Expression pattern of Lj6g3v1450720.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1450720.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.