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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1513540 |
| Transcript ID | Lj6g3v1513540.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable polygalacturonase-like [Glycine max] gi|356529330|ref|XP_003533248.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 15 | 15 | – | – | |
| Phobius | 1 | 1 | 1 | – | – | |
| SignalP | 1 | 15 | 15 | – | – | |
| Phobius | 2 | 10 | 9 | – | – | |
| Phobius | 11 | 15 | 5 | – | – | |
| Phobius | 16 | 24 | 9 | – | – | |
| Phobius | 25 | 47 | 23 | – | – | |
| TMHMM | 25 | 47 | 23 | – | – | |
| PANTHER | 26 | 513 | 488 | 0 | – | |
| PANTHER | 26 | 513 | 488 | 0 | – | |
| Phobius | 48 | 67 | 20 | – | – | |
| TMHMM | 60 | 82 | 23 | – | – | |
| Phobius | 68 | 86 | 19 | – | – | |
| Phobius | 87 | 520 | 434 | – | – | |
| SUPERFAMILY | 99 | 496 | 398 | 4.23E-89 | ||
| Gene3D | 99 | 484 | 386 | 1.00E-99 | ||
| Pfam | 200 | 481 | 282 | 4.30E-29 | ||
| SMART | 248 | 270 | 23 | 2700 | ||
| SMART | 271 | 297 | 27 | 4200 | ||
| SMART | 298 | 319 | 22 | 3800 | ||
| SMART | 332 | 354 | 23 | 580 | ||
| SMART | 360 | 381 | 22 | 1200 | ||
| SMART | 389 | 410 | 22 | 5200 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of Lj6g3v1513540.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1513540.1, powered by CORGI.
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