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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1559270 |
| Transcript ID | Lj6g3v1559270.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Calmodulin-binding transcription activator [Medicago truncatula] gi|357449029|ref|XP_003594790.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 902 | 902 | 0 | – | |
| PANTHER | 1 | 902 | 902 | 0 | – | |
| ProSiteProfiles | 25 | 151 | 127 | 74.636 | ||
| SMART | 28 | 146 | 119 | 4.50E-70 | ||
| Pfam | 31 | 144 | 114 | 3.10E-43 | ||
| MobiDBLite | 148 | 189 | 42 | – | – | |
| Gene3D | 335 | 440 | 106 | 7.70E-05 | ||
| SUPERFAMILY | 351 | 438 | 88 | 1.87E-15 | ||
| Pfam | 352 | 437 | 86 | 2.90E-04 | ||
| CDD | 528 | 647 | 120 | 3.03E-15 | – | |
| Pfam | 529 | 617 | 89 | 1.60E-07 | ||
| Gene3D | 546 | 650 | 105 | 5.40E-16 | ||
| SUPERFAMILY | 547 | 650 | 104 | 9.48E-18 | ||
| ProSiteProfiles | 555 | 620 | 66 | 15.618 | ||
| SMART | 588 | 617 | 30 | 6.80E-06 | ||
| ProSiteProfiles | 588 | 620 | 33 | 11.514 | ||
| SMART | 627 | 658 | 32 | 2100 | ||
| SMART | 752 | 774 | 23 | 28 | ||
| ProSiteProfiles | 753 | 779 | 27 | 6.852 | ||
| Pfam | 755 | 773 | 19 | 0.18 | ||
| SMART | 775 | 797 | 23 | 0.17 | ||
| ProSiteProfiles | 776 | 800 | 25 | 8.883 | ||
| Pfam | 777 | 797 | 21 | 0.014 | ||
| SMART | 855 | 877 | 23 | 19 | ||
| ProSiteProfiles | 857 | 885 | 29 | 7.876 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v1559270.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1559270.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.