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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1559330 |
| Transcript ID | Lj6g3v1559330.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Cicer arietinum] gi|502108063|ref|XP_004493379.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 208 | 208 | 0 | – | |
| PANTHER | 1 | 208 | 208 | 0 | – | |
| ProSiteProfiles | 41 | 71 | 31 | 7.191 | ||
| Pfam | 47 | 71 | 25 | 0.76 | ||
| Pfam | 72 | 116 | 45 | 1.50E-11 | ||
| ProSiteProfiles | 72 | 106 | 35 | 12.134 | ||
| TIGRFAM | 75 | 108 | 34 | 1.60E-08 | ||
| ProSiteProfiles | 107 | 141 | 35 | 5.448 | ||
| ProSiteProfiles | 142 | 172 | 31 | 9.142 | ||
| Pfam | 147 | 172 | 26 | 0.0011 | ||
| Gene3D | 148 | 190 | 43 | 1.00E-07 | ||
| ProSiteProfiles | 173 | 207 | 35 | 10.863 | ||
| Pfam | 175 | 204 | 30 | 2.10E-04 | ||
| TIGRFAM | 175 | 208 | 34 | 5.70E-05 | ||
| ProSiteProfiles | 244 | 274 | 31 | 6.39 | ||
| PANTHER | 245 | 555 | 311 | 0 | – | |
| PANTHER | 245 | 555 | 311 | 0 | – | |
| Pfam | 274 | 321 | 48 | 1.60E-07 | ||
| ProSiteProfiles | 275 | 305 | 31 | 10.172 | ||
| TIGRFAM | 277 | 311 | 35 | 5.20E-07 | ||
| Gene3D | 278 | 305 | 28 | 1.00E-07 | ||
| ProSiteProfiles | 311 | 345 | 35 | 6.434 | ||
| Gene3D | 343 | 404 | 62 | 1.00E-07 | ||
| ProSiteProfiles | 346 | 376 | 31 | 9.262 | ||
| TIGRFAM | 351 | 374 | 24 | 3.20E-04 | ||
| Pfam | 351 | 375 | 25 | 5.50E-05 | ||
| ProSiteProfiles | 377 | 411 | 35 | 12.025 | ||
| Pfam | 378 | 424 | 47 | 2.20E-11 | ||
| TIGRFAM | 379 | 412 | 34 | 9.10E-09 | ||
| ProSiteProfiles | 412 | 447 | 36 | 8.364 | ||
| ProSiteProfiles | 448 | 478 | 31 | 6.566 | ||
| Pfam | 452 | 475 | 24 | 0.27 | ||
| Gene3D | 478 | 520 | 43 | 8.90E-04 | ||
| ProSiteProfiles | 514 | 548 | 35 | 6.445 | ||
| Gene3D | 521 | 535 | 15 | 1.00E-07 | ||
| Pfam | 560 | 674 | 115 | 9.30E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj6g3v1559330.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1559330.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.