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Lj6g3v1708410.2

Overview

Field Value
Gene ID Lj6g3v1708410
Transcript ID Lj6g3v1708410.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description farnesyl-diphosphate synthase [Glycyrrhiza uralensis] gi|291585672|gb|ADE18770.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11525:SF5
3 342 340 1.40E-232 –
PANTHER
PTHR11525
3 342 340 1.40E-232 –
SFLD
SFLDG01017
5 342 338 0 –
Gene3D
G3DSA:1.10.600.10
5 342 338 1.40E-108
IPR008949
SUPERFAMILY
SSF48576
6 341 336 4.32E-88
IPR008949
CDD
cd00685
30 340 311 2.46E-76 –
Pfam
PF00348
33 296 264 6.80E-93
IPR000092
SFLD
SFLDS00005
40 341 302 0 –
ProSitePatterns
PS00723
90 104 15 –
IPR033749
ProSitePatterns
PS00444
224 236 13 –
IPR033749

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008299
Biological process Isoprenoid biosynthetic process The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj6g3v1708410.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1708410.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.