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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1880110 |
| Transcript ID | Lj6g3v1880110.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g77170-like [Cicer arietinum] gi|502138621|ref|XP_004503475.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 36 | 449 | 414 | 5.30E-276 | – | |
| PANTHER | 36 | 449 | 414 | 5.30E-276 | – | |
| ProSiteProfiles | 67 | 101 | 35 | 9.131 | ||
| Pfam | 71 | 99 | 29 | 0.062 | ||
| ProSiteProfiles | 137 | 167 | 31 | 5.7 | ||
| Pfam | 144 | 163 | 20 | 0.26 | ||
| ProSiteProfiles | 168 | 202 | 35 | 10.622 | ||
| Pfam | 171 | 200 | 30 | 8.40E-05 | ||
| TIGRFAM | 171 | 203 | 33 | 5.40E-06 | ||
| Gene3D | 236 | 315 | 80 | 1.10E-04 | ||
| ProSiteProfiles | 240 | 270 | 31 | 10.063 | ||
| TIGRFAM | 243 | 272 | 30 | 2.90E-05 | ||
| ProSiteProfiles | 271 | 305 | 35 | 11.564 | ||
| Pfam | 271 | 318 | 48 | 1.90E-08 | ||
| TIGRFAM | 274 | 306 | 33 | 6.10E-04 | ||
| ProSiteProfiles | 306 | 336 | 31 | 6.708 | ||
| ProSiteProfiles | 342 | 372 | 31 | 7.958 | ||
| Pfam | 346 | 370 | 25 | 2.80E-04 | ||
| TIGRFAM | 346 | 369 | 24 | 0.0011 | ||
| Gene3D | 406 | 426 | 21 | 1.10E-04 | ||
| ProSiteProfiles | 408 | 442 | 35 | 7.289 | ||
| Pfam | 412 | 437 | 26 | 0.82 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v1880110.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1880110.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.