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Lj6g3v1887910.1

Overview

Field Value
Gene ID Lj6g3v1887910
Transcript ID Lj6g3v1887910.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum] gi|502078956|ref|XP_004486107.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 27 27 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
1 281 281 – –
PANTHER
PTHR32133
13 276 264 2.00E-88 –
PANTHER
PTHR32133:SF135
13 276 264 2.00E-88 –
SUPERFAMILY
SSF81383
24 94 71 4.45E-17
IPR001810
ProSiteProfiles
PS50181
26 72 47 11.061
IPR001810
Gene3D
G3DSA:1.20.1280.50
27 68 42 5.30E-11 –
Pfam
PF00646
28 71 44 2.60E-10
IPR001810
SMART
SM00256
32 72 41 3.00E-09
IPR001810
TIGRFAM
TIGR01640
136 276 141 8.50E-22
IPR017451
TMHMM
TMhelix
282 304 23 – –
Phobius
TRANSMEMBRANE
282 303 22 – –
Phobius
CYTOPLASMIC_DOMAIN
304 306 3 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj6g3v1887910.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1887910.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.