Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj6g3v1934050.1

Overview

Field Value
Gene ID Lj6g3v1934050
Transcript ID Lj6g3v1934050.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: la-related protein 7-like [Cicer arietinum] gi|502078710|ref|XP_004486031.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 85 85 – –
PANTHER
PTHR22792:SF58
56 389 334 5.70E-104 –
PANTHER
PTHR22792
56 389 334 5.70E-104 –
ProSiteProfiles
PS50961
87 178 92 26.425
IPR006630
SUPERFAMILY
SSF46785
89 178 90 6.89E-25
IPR011991
Gene3D
G3DSA:1.10.10.10
91 174 84 3.60E-28
IPR011991
SMART
SM00715
91 171 81 1.80E-36
IPR006630
Pfam
PF05383
97 154 58 6.90E-21
IPR006630
PRINTS
PR00302
100 117 18 3.60E-11
IPR002344
PRINTS
PR00302
126 141 16 3.60E-11
IPR002344
PRINTS
PR00302
157 170 14 3.60E-11
IPR002344
SUPERFAMILY
SSF54928
181 274 94 1.25E-11
IPR012677
ProSiteProfiles
PS50102
185 272 88 10.326
IPR000504
Gene3D
G3DSA:3.30.70.330
185 272 88 6.30E-11
IPR012677
SMART
SM00360
186 273 88 6.00E-04
IPR000504
Pfam
PF00076
187 260 74 2.20E-07
IPR000504
PRINTS
PR00302
237 255 19 3.60E-11
IPR002344
MobiDBLite
mobidb-lite
283 395 113 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of
GO:1990904
Cellular component Ribonucleoprotein complex A macromolecular complex containing both protein and RNA molecules.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj6g3v1934050.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1934050.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.