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Lj6g3v1946250.1

Overview

Field Value
Gene ID Lj6g3v1946250
Transcript ID Lj6g3v1946250.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: F-box/kelch-repeat protein At1g30090-like [Glycine max] gi|356549104|ref|XP_003542937.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24411
42 387 346 2.10E-264 –
PANTHER
PTHR24411:SF27
42 387 346 2.10E-264 –
Gene3D
G3DSA:1.20.1280.50
50 83 34 9.90E-08 –
SUPERFAMILY
SSF81383
51 131 81 5.63E-10
IPR001810
Pfam
PF00646
53 90 38 2.90E-06
IPR001810
SMART
SM00256
56 96 41 1.40E-04
IPR001810
Gene3D
G3DSA:2.130.10.80
84 354 271 6.40E-42
IPR015916
SUPERFAMILY
SSF117281
104 356 253 1.15E-47 –
SMART
SM00612
158 206 49 0.0068
IPR006652
Pfam
PF01344
195 241 47 1.90E-07
IPR006652
SMART
SM00612
207 254 48 3.40E-06
IPR006652

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 21

Expression data

Expression pattern

Expression pattern of Lj6g3v1946250.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1946250.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.