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Lj6g3v1946500.1

Overview

Field Value
Gene ID Lj6g3v1946500
Transcript ID Lj6g3v1946500.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: F-box protein SKIP19-like [Glycine max] gi|356546510|ref|XP_003541669.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24006:SF122
17 231 215 1.60E-38 –
Gene3D
G3DSA:3.80.10.10
17 255 239 4.70E-37
IPR032675
PANTHER
PTHR24006
17 231 215 1.60E-38 –
ProSiteProfiles
PS50181
18 65 48 10.822
IPR001810
Pfam
PF12937
21 66 46 5.70E-07
IPR001810
SUPERFAMILY
SSF52047
44 235 192 2.16E-23 –
SMART
SM00367
113 138 26 0.0047
IPR006553
Pfam
PF13516
114 136 23 0.014
IPR001611
SMART
SM00367
195 219 25 61
IPR006553
Pfam
PF13516
198 216 19 0.019
IPR001611
SMART
SM00367
220 243 24 46
IPR006553

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj6g3v1946500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1946500.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.