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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1995970 |
| Transcript ID | Lj6g3v1995970.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g28690, mitochondrial-like [Cicer arietinum] gi|502078218|ref|XP_004485875.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 23 | 519 | 497 | 0 | – | |
| PANTHER | 23 | 519 | 497 | 0 | – | |
| Gene3D | 96 | 127 | 32 | 6.80E-05 | ||
| ProSiteProfiles | 97 | 131 | 35 | 9.12 | ||
| Pfam | 100 | 128 | 29 | 0.001 | ||
| TIGRFAM | 100 | 132 | 33 | 3.80E-04 | ||
| ProSiteProfiles | 175 | 209 | 35 | 8.703 | ||
| Pfam | 178 | 207 | 30 | 0.051 | ||
| TIGRFAM | 178 | 207 | 30 | 0.0027 | ||
| Gene3D | 203 | 236 | 34 | 6.80E-05 | ||
| Pfam | 236 | 284 | 49 | 1.10E-07 | ||
| ProSiteProfiles | 237 | 272 | 36 | 9.854 | ||
| ProSiteProfiles | 273 | 303 | 31 | 5.031 | ||
| ProSiteProfiles | 308 | 338 | 31 | 7.169 | ||
| Pfam | 313 | 340 | 28 | 0.0056 | ||
| TIGRFAM | 314 | 340 | 27 | 0.0019 | ||
| Gene3D | 336 | 366 | 31 | 6.80E-05 | ||
| ProSiteProfiles | 339 | 374 | 36 | 12.036 | ||
| TIGRFAM | 341 | 375 | 35 | 6.60E-10 | ||
| Pfam | 341 | 367 | 27 | 4.10E-10 | ||
| ProSiteProfiles | 375 | 405 | 31 | 8.298 | ||
| TIGRFAM | 377 | 410 | 34 | 0.0011 | ||
| Pfam | 377 | 404 | 28 | 0.0029 | ||
| ProSiteProfiles | 411 | 441 | 31 | 7.333 | ||
| ProSiteProfiles | 478 | 512 | 35 | 7.125 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v1995970.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1995970.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.