Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj6g3v2019760.1

Overview

Field Value
Gene ID Lj6g3v2019760
Transcript ID Lj6g3v2019760.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: serine/threonine-protein kinase HT1 [Glycine max] gi|356549321|ref|XP_003543042.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
39 137 99 – –
PANTHER
PTHR23257:SF81
63 466 404 2.70E-244 –
PANTHER
PTHR23257
63 466 404 2.70E-244 –
Gene3D
G3DSA:3.30.200.20
117 231 115 4.00E-18 –
SUPERFAMILY
SSF56112
146 417 272 4.99E-77
IPR011009
SMART
SM00220
163 420 258 2.40E-61
IPR000719
ProSiteProfiles
PS50011
163 421 259 40.4
IPR000719
Pfam
PF07714
165 417 253 2.90E-61
IPR001245
CDD
cd13999
170 417 248 6.01E-113 –
Gene3D
G3DSA:1.10.510.10
232 415 184 5.30E-61 –
PRINTS
PR00109
241 254 14 4.30E-19
IPR001245
PRINTS
PR00109
279 297 19 4.30E-19
IPR001245
ProSitePatterns
PS00108
285 297 13 –
IPR008271
PRINTS
PR00109
325 335 11 4.30E-19
IPR001245
PRINTS
PR00109
344 366 23 4.30E-19
IPR001245
PRINTS
PR00109
388 410 23 4.30E-19
IPR001245

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj6g3v2019760.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v2019760.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.