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Lj6g3v2043200.1

Overview

Field	Value
Gene ID	Lj6g3v2043200
Transcript ID	Lj6g3v2043200.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: probable E3 ubiquitin-protein ligase makorin-1-like [Glycine max] gi\|356521345\|ref\|XP_003529317.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR15315 View details on PTHR15315 Search for proteins/transripts with this domain View external data on PTHR15315	41	251	211	2.60E-173	–
PANTHER	PTHR15315:SF20 View details on PTHR15315:SF20 Search for proteins/transripts with this domain View external data on PTHR15315:SF20	41	251	211	2.60E-173	–
Gene3D	G3DSA:3.30.40.10 View details on G3DSA:3.30.40.10 Search for proteins/transripts with this domain View external data on G3DSA:3.30.40.10	140	200	61	1.30E-13	IPR013083 Show description in modal box View details on IPR013083 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF57850 View details on SSF57850 Search for proteins/transripts with this domain View external data on SSF57850	150	201	52	2.10E-12	–
Pfam	PF13920 View details on PF13920 Search for proteins/transripts with this domain View external data on PF13920	153	199	47	1.00E-09	–
CDD	cd00162 View details on cd00162 Search for proteins/transripts with this domain View external data on cd00162	155	197	43	9.39E-09	–
SMART	SM00184 View details on SM00184 Search for proteins/transripts with this domain View external data on SM00184	156	193	38	4.00E-06	IPR001841 Show description in modal box View details on IPR001841 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50089 View details on PS50089 Search for proteins/transripts with this domain View external data on PS50089	156	194	39	12.076	IPR001841 Show description in modal box View details on IPR001841 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSitePatterns	PS00518 View details on PS00518 Search for proteins/transripts with this domain View external data on PS00518	171	180	10	–	IPR017907 Show description in modal box View details on IPR017907 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 27

Expression data

Expression pattern

Expression pattern of Lj6g3v2043200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v2043200.1, powered by CORGI.

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