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| Field | Value |
|---|---|
| Gene ID | Lj6g3v2134280 |
| Transcript ID | Lj6g3v2134280.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g13150-like [Vitis vinifera] gi|359496222|ref|XP_002263756.2| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 58 | 405 | 348 | 1.60E-115 | – | |
| PANTHER | 58 | 405 | 348 | 1.60E-115 | – | |
| ProSiteProfiles | 119 | 153 | 35 | 6.993 | ||
| Gene3D | 120 | 223 | 104 | 2.90E-05 | ||
| Pfam | 126 | 149 | 24 | 9.20E-04 | ||
| TIGRFAM | 126 | 149 | 24 | 2.70E-04 | ||
| ProSiteProfiles | 154 | 184 | 31 | 5.393 | ||
| Pfam | 190 | 236 | 47 | 1.30E-12 | ||
| ProSiteProfiles | 190 | 224 | 35 | 13.241 | ||
| TIGRFAM | 193 | 225 | 33 | 1.30E-09 | ||
| ProSiteProfiles | 225 | 259 | 35 | 9.01 | ||
| Pfam | 260 | 309 | 50 | 5.00E-08 | ||
| ProSiteProfiles | 261 | 295 | 35 | 9.229 | ||
| Gene3D | 294 | 359 | 66 | 2.90E-05 | ||
| ProSiteProfiles | 296 | 330 | 35 | 11.104 | ||
| TIGRFAM | 300 | 329 | 30 | 5.30E-08 | ||
| ProSiteProfiles | 331 | 365 | 35 | 6.675 | ||
| ProSiteProfiles | 367 | 401 | 35 | 5.908 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v2134280.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v2134280.1, powered by CORGI.
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