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| Field | Value |
|---|---|
| Gene ID | Lj6g3v2192080 |
| Transcript ID | Lj6g3v2192080.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: DNA polymerase V-like isoform 1 [Glycine max] gi|356549489|ref|XP_003543126.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 430 | 430 | – | – | |
| MobiDBLite | 1 | 84 | 84 | – | – | |
| PANTHER | 33 | 127 | 95 | 8.40E-287 | – | |
| PANTHER | 33 | 127 | 95 | 8.40E-287 | ||
| SUPERFAMILY | 90 | 118 | 29 | 2.76E-10 | ||
| PANTHER | 143 | 373 | 231 | 8.40E-287 | – | |
| PANTHER | 143 | 373 | 231 | 8.40E-287 | ||
| SUPERFAMILY | 149 | 201 | 53 | 2.76E-10 | ||
| Pfam | 154 | 961 | 808 | 5.40E-185 | ||
| SUPERFAMILY | 238 | 261 | 24 | 2.76E-10 | ||
| SUPERFAMILY | 332 | 487 | 156 | 2.76E-10 | ||
| PANTHER | 395 | 1038 | 644 | 8.40E-287 | ||
| PANTHER | 395 | 1038 | 644 | 8.40E-287 | – | |
| Phobius | 431 | 452 | 22 | – | – | |
| Phobius | 453 | 1260 | 808 | – | – | |
| MobiDBLite | 549 | 574 | 26 | – | – | |
| SUPERFAMILY | 788 | 851 | 64 | 2.76E-10 | ||
| MobiDBLite | 843 | 862 | 20 | – | – | |
| MobiDBLite | 868 | 917 | 50 | – | – | |
| SUPERFAMILY | 950 | 1004 | 55 | 2.76E-10 | ||
| MobiDBLite | 1038 | 1058 | 21 | – | – | |
| PANTHER | 1068 | 1244 | 177 | 8.40E-287 | ||
| PANTHER | 1068 | 1244 | 177 | 8.40E-287 | – | |
| SUPERFAMILY | 1128 | 1191 | 64 | 2.76E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleolus | A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Transcription factor binding | Interacting selectively and non-covalently with a transcription factor, any protein required to initiate or regulate transcription. |
Expression pattern of Lj6g3v2192080.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v2192080.1, powered by CORGI.
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