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| Field | Value |
|---|---|
| Gene ID | Lj6g3v2192250 |
| Transcript ID | Lj6g3v2192250.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial-like [Glycine max] gi|356557599|ref|XP_003547103.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 29 | 598 | 570 | 0 | – | |
| PANTHER | 29 | 598 | 570 | 0 | – | |
| ProSiteProfiles | 84 | 114 | 31 | 8.079 | ||
| Pfam | 88 | 112 | 25 | 0.04 | ||
| Gene3D | 114 | 151 | 38 | 5.90E-11 | ||
| ProSiteProfiles | 115 | 149 | 35 | 11.29 | ||
| TIGRFAM | 117 | 149 | 33 | 1.00E-05 | ||
| Pfam | 117 | 140 | 24 | 7.60E-07 | ||
| ProSiteProfiles | 186 | 216 | 31 | 5.371 | ||
| Pfam | 216 | 265 | 50 | 4.20E-08 | ||
| ProSiteProfiles | 217 | 251 | 35 | 9.756 | ||
| TIGRFAM | 219 | 252 | 34 | 3.20E-04 | ||
| ProSiteProfiles | 252 | 286 | 35 | 6.588 | ||
| ProSiteProfiles | 287 | 318 | 32 | 5.864 | ||
| Gene3D | 318 | 450 | 133 | 5.90E-11 | ||
| ProSiteProfiles | 319 | 353 | 35 | 10.139 | ||
| Pfam | 321 | 348 | 28 | 1.90E-04 | ||
| TIGRFAM | 321 | 354 | 34 | 1.50E-04 | ||
| ProSiteProfiles | 354 | 388 | 35 | 5.075 | ||
| ProSiteProfiles | 389 | 419 | 31 | 8.013 | ||
| Pfam | 394 | 419 | 26 | 5.80E-04 | ||
| TIGRFAM | 394 | 420 | 27 | 0.0028 | ||
| ProSiteProfiles | 420 | 454 | 35 | 13.362 | ||
| Pfam | 420 | 466 | 47 | 6.50E-13 | ||
| TIGRFAM | 422 | 456 | 35 | 1.10E-09 | ||
| ProSiteProfiles | 455 | 489 | 35 | 7.125 | ||
| Gene3D | 488 | 574 | 87 | 5.90E-11 | ||
| ProSiteProfiles | 491 | 521 | 31 | 7.936 | ||
| Pfam | 495 | 519 | 25 | 0.072 | ||
| ProSiteProfiles | 523 | 553 | 31 | 5.799 | ||
| ProSiteProfiles | 557 | 591 | 35 | 5.886 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v2192250.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v2192250.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.