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| Field | Value |
|---|---|
| Gene ID | Lj6g3v2257820 |
| Transcript ID | Lj6g3v2257820.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: transmembrane protein 87A-like [Glycine max] gi|356558534|ref|XP_003547560.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 36 | 36 | – | – | |
| SignalP | 1 | 36 | 36 | – | – | |
| Phobius | 1 | 18 | 18 | – | – | |
| Phobius | 1 | 36 | 36 | – | – | |
| PANTHER | 8 | 515 | 508 | 0 | ||
| PANTHER | 8 | 515 | 508 | 0 | – | |
| TMHMM | 15 | 37 | 23 | – | – | |
| Phobius | 19 | 30 | 12 | – | – | |
| Phobius | 31 | 36 | 6 | – | – | |
| Phobius | 37 | 214 | 178 | – | – | |
| Pfam | 170 | 457 | 288 | 8.10E-104 | ||
| TMHMM | 215 | 237 | 23 | – | – | |
| Phobius | 215 | 235 | 21 | – | – | |
| Phobius | 236 | 241 | 6 | – | – | |
| Phobius | 242 | 264 | 23 | – | – | |
| TMHMM | 242 | 264 | 23 | – | – | |
| Phobius | 265 | 275 | 11 | – | – | |
| Phobius | 276 | 298 | 23 | – | – | |
| Phobius | 299 | 309 | 11 | – | – | |
| Phobius | 310 | 329 | 20 | – | – | |
| TMHMM | 319 | 341 | 23 | – | – | |
| Phobius | 330 | 348 | 19 | – | – | |
| Phobius | 349 | 369 | 21 | – | – | |
| TMHMM | 351 | 373 | 23 | – | – | |
| Phobius | 370 | 389 | 20 | – | – | |
| Phobius | 390 | 409 | 20 | – | – | |
| TMHMM | 394 | 413 | 20 | – | – | |
| Phobius | 410 | 428 | 19 | – | – | |
| TMHMM | 428 | 450 | 23 | – | – | |
| Phobius | 429 | 451 | 23 | – | – | |
| Phobius | 452 | 515 | 64 | – | – | |
| MobiDBLite | 461 | 515 | 55 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj6g3v2257820.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v2257820.1, powered by CORGI.
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