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Lj6g3v2257830.1

Overview

Field	Value
Gene ID	Lj6g3v2257830
Transcript ID	Lj6g3v2257830.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Glycine max] gi\|356528785\|ref\|XP_003532978.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	284	284	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	151	151	–	–
PANTHER	PTHR21596 View details on PTHR21596 Search for proteins/transripts with this domain View external data on PTHR21596	126	277	152	3.20E-132	–
PANTHER	PTHR21596:SF12 View details on PTHR21596:SF12 Search for proteins/transripts with this domain View external data on PTHR21596:SF12	126	277	152	3.20E-132	–
CDD	cd12266 View details on cd12266 Search for proteins/transripts with this domain View external data on cd12266	257	398	142	4.02E-30	IPR005380 Show description in modal box View details on IPR005380 Search for proteins/transripts with this domain View on EBI InterPro Service
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	285	302	18	–	–
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	303	474	172	–	–
Pfam	PF03468 View details on PF03468 Search for proteins/transripts with this domain View external data on PF03468	308	399	92	4.10E-23	IPR005380 Show description in modal box View details on IPR005380 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR21596:SF12 View details on PTHR21596:SF12 Search for proteins/transripts with this domain View external data on PTHR21596:SF12	309	474	166	3.20E-132	–
PANTHER	PTHR21596 View details on PTHR21596 Search for proteins/transripts with this domain View external data on PTHR21596	309	474	166	3.20E-132	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0031047 View details of GO:0031047 AmiGO InterPro QuickGO	Biological process	Gene silencing by RNA	Any process in which RNA molecules inactivate expression of target genes.	Subterm of View details of GO:0016458

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj6g3v2257830.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v2257830.1, powered by CORGI.

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