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Lj6g3v2257830.1

Overview

Field Value
Gene ID Lj6g3v2257830
Transcript ID Lj6g3v2257830.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Glycine max] gi|356528785|ref|XP_003532978.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 284 284
MobiDBLite 1 151 151
PANTHER 126 277 152 3.20E-132
PANTHER 126 277 152 3.20E-132
CDD 257 398 142 4.02E-30
Phobius 285 302 18
Phobius 303 474 172
Pfam 308 399 92 4.10E-23
PANTHER 309 474 166 3.20E-132
PANTHER 309 474 166 3.20E-132

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Gene silencing by RNA Any process in which RNA molecules inactivate expression of target genes.

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj6g3v2257830.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v2257830.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.