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| Field | Value |
|---|---|
| Gene ID | Lj6g3v2274470 |
| Transcript ID | Lj6g3v2274470.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Senescence associated gene 18 isoform 1 [Theobroma cacao] gi|508706170|gb|EOX98066.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 27 | 27 | – | – | |
| PANTHER | 1 | 286 | 286 | 7.00E-193 | – | |
| SignalP | 1 | 29 | 29 | – | – | |
| PANTHER | 1 | 286 | 286 | 7.00E-193 | – | |
| Phobius | 1 | 6 | 6 | – | – | |
| TMHMM | 5 | 27 | 23 | – | – | |
| Phobius | 7 | 27 | 21 | – | – | |
| Phobius | 28 | 46 | 19 | – | – | |
| Phobius | 47 | 69 | 23 | – | – | |
| Pfam | 47 | 162 | 116 | 6.00E-07 | ||
| TMHMM | 47 | 66 | 20 | – | – | |
| Phobius | 70 | 80 | 11 | – | – | |
| Phobius | 81 | 103 | 23 | – | – | |
| TMHMM | 81 | 103 | 23 | – | – | |
| Phobius | 104 | 114 | 11 | – | – | |
| TMHMM | 110 | 130 | 21 | – | – | |
| Phobius | 115 | 133 | 19 | – | – | |
| Phobius | 134 | 139 | 6 | – | – | |
| Phobius | 140 | 159 | 20 | – | – | |
| TMHMM | 140 | 159 | 20 | – | – | |
| Phobius | 160 | 164 | 5 | – | – | |
| Phobius | 165 | 183 | 19 | – | – | |
| TMHMM | 166 | 188 | 23 | – | – | |
| Phobius | 184 | 189 | 6 | – | – | |
| Phobius | 190 | 206 | 17 | – | – | |
| Phobius | 207 | 225 | 19 | – | – | |
| TMHMM | 220 | 242 | 23 | – | – | |
| Phobius | 226 | 243 | 18 | – | – | |
| Phobius | 244 | 286 | 43 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ceramide metabolic process | The chemical reactions and pathways involving ceramides, any N-acylated sphingoid. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a linear amide. |
Expression pattern of Lj6g3v2274470.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v2274470.1, powered by CORGI.
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