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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR008901
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 10 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.549s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v1786020.1
n.a. Alkaline phytoceramidase (aPHC) [Arabidopsis thaliana] gi|334187627|ref|NP_001190292.1| chr1 20938175 20941996 +
2 domain predictions
3 GO terms
Lj2g3v2878260.1
n.a. PREDICTED: alkaline ceramidase 3-like [Cicer arietinum] gi|502149720|ref|XP_004507639.1| chr2 37420135 37425866 -
2 domain predictions
3 GO terms
Lj5g3v0404980.1
n.a. Alkaline phytoceramidase (aPHC) [Theobroma cacao] gi|508782650|gb|EOY29906.1| chr5 3920790 3925097 +
2 domain predictions
3 GO terms
Lj6g3v1786710.1
n.a. Alkaline ceramidase [Medicago truncatula] gi|357447851|ref|XP_003594201.1| chr6 19970308 19973238 -
2 domain predictions
3 GO terms
Lj6g3v2274470.1
n.a. Senescence associated gene 18 isoform 1 [Theobroma cacao] gi|508706170|gb|EOX98066.1| chr6 26468758 26471507 +
2 domain predictions
3 GO terms
LotjaGi1g1v0366900.1
n.a. Alkaline phytoceramidase (APHC); TAIR: AT5G11870.2 Alkaline phytoceramidase (aPHC); Swiss-Prot: sp|Q57321|MGLC_TREPA Galactoside transport system permease protein MglC homolog; TrEMBL-Plants: tr|V7AW36|V7AW36_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0366900 LjG1.1_chr1 84478928 84483657 +
2 domain predictions
3 GO terms
LotjaGi4g1v0009000.1
n.a. Alkaline ceramidase 3; TAIR: AT4G22330.1 Alkaline phytoceramidase (aPHC); Swiss-Prot: sp|Q9D099|ACER3_MOUSE Alkaline ceramidase 3; TrEMBL-Plants: tr|G7JKI1|G7JKI1_MEDTR Alkaline phytoceramidase; Found in the gene: LotjaGi4g1v0009000 LjG1.1_chr4 1230472 1237150 -
2 domain predictions
3 GO terms
LotjaGi4g1v0009000.2
n.a. Alkaline ceramidase 3; TAIR: AT4G22330.1 Alkaline phytoceramidase (aPHC); Swiss-Prot: sp|Q9D099|ACER3_MOUSE Alkaline ceramidase 3; TrEMBL-Plants: tr|G7JKI1|G7JKI1_MEDTR Alkaline phytoceramidase; Found in the gene: LotjaGi4g1v0009000 LjG1.1_chr4 1231659 1235998 -
2 domain predictions
3 GO terms
LotjaGi6g1v0287500.1
n.a. Alkaline ceramidase 3; TAIR: AT4G22330.1 Alkaline phytoceramidase (aPHC); Swiss-Prot: sp|Q9D099|ACER3_MOUSE Alkaline ceramidase 3; TrEMBL-Plants: tr|I3S1V4|I3S1V4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0287500 LjG1.1_chr6 60489504 60492722 -
2 domain predictions
3 GO terms
LotjaGi6g1v0287500.2
n.a. Alkaline ceramidase 3; TAIR: AT4G22330.1 Alkaline phytoceramidase (aPHC); Swiss-Prot: sp|Q9D099|ACER3_MOUSE Alkaline ceramidase 3; TrEMBL-Plants: tr|I3S1V4|I3S1V4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0287500 LjG1.1_chr6 60489845 60491595 -
2 domain predictions
3 GO terms