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Lj6g3v2287350.2

Overview

Field	Value
Gene ID	Lj6g3v2287350
Transcript ID	Lj6g3v2287350.2
Related isoforms 1	Lj6g3v2287350.1
Lotus japonicus genome version	MG20 v3.0
Description	KH domain-containing protein [Medicago truncatula] gi\|357445253\|ref\|XP_003592904.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR11208 View details on PTHR11208 Search for proteins/transripts with this domain View external data on PTHR11208	1	131	131	3.40E-103	–
PANTHER	PTHR11208:SF48 View details on PTHR11208:SF48 Search for proteins/transripts with this domain View external data on PTHR11208:SF48	1	131	131	3.40E-103	–
Gene3D	G3DSA:3.30.1370.10 View details on G3DSA:3.30.1370.10 Search for proteins/transripts with this domain View external data on G3DSA:3.30.1370.10	13	131	119	6.40E-33	IPR004088 Show description in modal box View details on IPR004088 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00322 View details on SM00322 Search for proteins/transripts with this domain View external data on SM00322	15	112	98	1.10E-04	IPR004087 Show description in modal box View details on IPR004087 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd02395 View details on cd02395 Search for proteins/transripts with this domain View external data on cd02395	20	131	112	6.15E-43	–
Pfam	PF00013 View details on PF00013 Search for proteins/transripts with this domain View external data on PF00013	20	64	45	1.20E-04	IPR004088 Show description in modal box View details on IPR004088 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF54791 View details on SSF54791 Search for proteins/transripts with this domain View external data on SSF54791	25	130	106	7.44E-26	IPR004088 Show description in modal box View details on IPR004088 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003676 View details of GO:0003676 AmiGO InterPro QuickGO	Molecular function	Nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.	Subterm of View details of GO:0097159 View details of GO:1901363
GO:0003723 View details of GO:0003723 AmiGO InterPro QuickGO	Molecular function	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.	Subterm of View details of GO:0003676

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj6g3v2287350.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v2287350.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.