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| Field | Value |
|---|---|
| Gene ID | LotjaGi0g1v0002100 |
| Transcript ID | LotjaGi0g1v0002100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT2G22410.1 SLOW GROWTH 1; Swiss-Prot: sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial; TrEMBL-Plants: tr|I1LZ60|I1LZ60_SOYBN Uncharacterized protein; Found in the gene: LotjaGi0g1v0002100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr0:1945601..1948331) extracted from Lotus japonicus Gifu genome v1.2.
AGCCAAGCATGCATGAACTAGTAACCATGGTGTGATACGATGTCGATGAGGAACCATGTTGCATCCATTGGCATCATCAT CAGCAAGCTACGATCGTGTAAAAGCATTGTTAGCATCATCATGCAGAACCATCCAACAAGCCCTTCAAATTCAAGCCCAC ATGGTGGTGACGGGTCTCCACCACGATCTCTTCCTCTCCACCGCACTCATCTCCTTCTTCGCCACCAACCACCGCGCCTT ACGCCACTCCCGCCGCCTCTTCTCCCTCGTCACTAACCCCGACCTCTTCCTCTGGAATGCCATCATCAAAGCCCATTCTC TCTCCCCCAACCACGCTTTCTCTCTCTATAAGTCAATGCTCTCTTCTTCCTCTGCTCCTTCCCCTGACTCCTTCACCTTC CCTTACCTCCTCAAGTCCTGTGCTAACGCACGAACCCCCCATTTGGGTCTTCAGCTTCATTGCCACCTTGTGAAGTCTCG GTTTCACTCCCATGTCTTTGTTGCCAACGCTCTCTTGCATTTCTATTGCGTTTTCAGGGATGCCCATAATGCATATAAGG TGTTTGAGCAAATGCCTGTAAGAGATTGTGTTTCTTATAACATGATGATTAATGGGTTTGTGCGTGCGGGTCGTGCTGGT TGTTCTATGAAAGTTTTGGGGGACATGAGGGGTTTTGGTATTCGGCCTGATGAGTATACCCTTGTTACTTTGTTGTCTGC TTGCTCGTCGTTGGAGGATCAGAGGGTTGGGAGGCAGGTGCATGGCTTGGTTTACAGGGAATTGGGTTGTTTAGGTGACA ATGCTTTGTTGGTGAATGCCCTCGTCGATATGTATGCTAAATGTGGGTGCTTGGAATTGGCAGAGAGAGTTGTGAGTGGG GTTAGAAATGGGAAGAGTGTTGTTGCGGCTTGGACTTCTTTGGTGAGTGCGTATGCGTCGCGCGGAGATGTTGAGGTTGC TCGAAGATTGTTTGACCAAATGGGTGAAAGAGACGTGGTTTCTTGGACAGCCATGATTAGTGGTTACTCTCATGCTGGAT ATTTCCAGGAAGCATTGGAACTGTTTGAGCAGTTGGAGGGTTTGGGAATGAAACCAGACGAGGTTGCTGTTGTTGCTGCT CTTTCGGCATGTGCGCGGCTGGGTGCCCTTGAGTTGGGAAGAAGGATTCACCTTAAATATGCCGCTGAGAATTGGCACTG TGGTCAAAATGGAGGATTCACTTGTGCTGTTGTTGATATGTATGCCAAGTGTGGAAGTATAGACACTGCTTTGGATGTAT TCTGTAAAACAAGTAAGGATAAAAAAACTACTATTCTTTATAATTCTATTATCTCTGGTCTTGCTCATCATGGCCTTGGT AAATATGCTATAACTTTATTTGAAGAAATGAGGTTATTAGGATTAGTACCGGATGGGGTAACATTTGTAGCACTTTTATG TGCTTGTGGTCATAGTGGTTTTGTTGATGAGGGGAAGAAGCTGTTTGAATCCATGTCGACTGACTACGGTGTCAACCCTC GAATGGAGCATTATGGCTGTATGGTTGACCTTCTTGGAAGGGGTGGTCTTCTGAGTGAAGCGTATCATTTAATTCTGAAT ATGCCATTTAAGGCGAATGCTGTGATATGGAGAGCATTGCTAAGTGCTTGCAAGGTACATGGAGATGTGGAATTGGCTAA ACTTGCCTACCAAGAGCTTCTCGCGGTGGAACATGATCATGGAGCCCGTTATGTGATGCTATCTAATATGCTAGCTGACA TGGATCAGCATGACGAAGCTGCAAGCGTGAGAAAAGCAATTGATAATGTTGGTATCCAGAAGCCACCTGGTTGGAGCTAT GTGGAAATGAATGGAGCTCTTCATAAGTTTCTGGCAGGTGACAAGTCTCACCCAGAAGCCAAAGCCACTGAGCTGATGCT CATGAACATCAATATGGGAGTAAAATCAATTGGACATGCTATCAGTGCATCAAAAATGGTGTTTGATATAGATTAATAGC ATGTTTGGAAATCCTTATTCAATTGATTTTAAAGGCAGGATCAATTCTAAAGAGAAGCTTCTGAGTTATGAGTTCCAGAA TATATTTTGAGAAAAAATAAGTTATCAGACATGCTATTATTAAGTCGAGAAAGATTTTGGGTGAGAAATTCTAGCTTTGA CCAAATGGGGTTATTGTTGGCTGAACTTAATTAAGCTGTCATCCAAGTAATGCCTAAATAACAAAAGGAAGGTGATGCCC TGTGATCTTGCTGTGTGAACATTTATCCAAAATAGAATGGATATTGACATTTTGGTATTTTCAAAGAAAACTCAGGATCT TCGAGCGTACAGTGGTTATTGGACTTTGTATCTCCAAATTTGAGAGTCGCGATGGAGAATCAGCTAACAACATTTCGTAT TTTAACAAGTAAAATCGCTGTGAAAAGGGGTATTTACAGCAATGACATTTTTCGAATGTGAGAAATTCAGAAGAGATACA TGCTCTACATGGTCAGAAAATTTAGATAGAGTTGAGCTGATACTTGAGATTCAATGATGGTGATATAGTTAGATACAAAA ATAAACTGAAACAGGTAAAGAGTGTATGCTGTTTTTGTTAAAATTTCTTTTCCTGGCTTATATAACACAAAGATGCATAA TATCAATTGGTTCCACTTTTTGGACTGGCATATTCTTCATAACCCTTGGATTGTTGCCATTTCTCGTAGGCTCCACAATT TCTAATCTGTC
CDS sequence (LotjaGi0g1v0002100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCATCCATTGGCATCATCATCAGCAAGCTACGATCGTGTAAAAGCATTGTTAGCATCATCATGCAGAACCATCCA ACAAGCCCTTCAAATTCAAGCCCACATGGTGGTGACGGGTCTCCACCACGATCTCTTCCTCTCCACCGCACTCATCTCCT TCTTCGCCACCAACCACCGCGCCTTACGCCACTCCCGCCGCCTCTTCTCCCTCGTCACTAACCCCGACCTCTTCCTCTGG AATGCCATCATCAAAGCCCATTCTCTCTCCCCCAACCACGCTTTCTCTCTCTATAAGTCAATGCTCTCTTCTTCCTCTGC TCCTTCCCCTGACTCCTTCACCTTCCCTTACCTCCTCAAGTCCTGTGCTAACGCACGAACCCCCCATTTGGGTCTTCAGC TTCATTGCCACCTTGTGAAGTCTCGGTTTCACTCCCATGTCTTTGTTGCCAACGCTCTCTTGCATTTCTATTGCGTTTTC AGGGATGCCCATAATGCATATAAGGTGTTTGAGCAAATGCCTGTAAGAGATTGTGTTTCTTATAACATGATGATTAATGG GTTTGTGCGTGCGGGTCGTGCTGGTTGTTCTATGAAAGTTTTGGGGGACATGAGGGGTTTTGGTATTCGGCCTGATGAGT ATACCCTTGTTACTTTGTTGTCTGCTTGCTCGTCGTTGGAGGATCAGAGGGTTGGGAGGCAGGTGCATGGCTTGGTTTAC AGGGAATTGGGTTGTTTAGGTGACAATGCTTTGTTGGTGAATGCCCTCGTCGATATGTATGCTAAATGTGGGTGCTTGGA ATTGGCAGAGAGAGTTGTGAGTGGGGTTAGAAATGGGAAGAGTGTTGTTGCGGCTTGGACTTCTTTGGTGAGTGCGTATG CGTCGCGCGGAGATGTTGAGGTTGCTCGAAGATTGTTTGACCAAATGGGTGAAAGAGACGTGGTTTCTTGGACAGCCATG ATTAGTGGTTACTCTCATGCTGGATATTTCCAGGAAGCATTGGAACTGTTTGAGCAGTTGGAGGGTTTGGGAATGAAACC AGACGAGGTTGCTGTTGTTGCTGCTCTTTCGGCATGTGCGCGGCTGGGTGCCCTTGAGTTGGGAAGAAGGATTCACCTTA AATATGCCGCTGAGAATTGGCACTGTGGTCAAAATGGAGGATTCACTTGTGCTGTTGTTGATATGTATGCCAAGTGTGGA AGTATAGACACTGCTTTGGATGTATTCTGTAAAACAAGTAAGGATAAAAAAACTACTATTCTTTATAATTCTATTATCTC TGGTCTTGCTCATCATGGCCTTGGTAAATATGCTATAACTTTATTTGAAGAAATGAGGTTATTAGGATTAGTACCGGATG GGGTAACATTTGTAGCACTTTTATGTGCTTGTGGTCATAGTGGTTTTGTTGATGAGGGGAAGAAGCTGTTTGAATCCATG TCGACTGACTACGGTGTCAACCCTCGAATGGAGCATTATGGCTGTATGGTTGACCTTCTTGGAAGGGGTGGTCTTCTGAG TGAAGCGTATCATTTAATTCTGAATATGCCATTTAAGGCGAATGCTGTGATATGGAGAGCATTGCTAAGTGCTTGCAAGG TACATGGAGATGTGGAATTGGCTAAACTTGCCTACCAAGAGCTTCTCGCGGTGGAACATGATCATGGAGCCCGTTATGTG ATGCTATCTAATATGCTAGCTGACATGGATCAGCATGACGAAGCTGCAAGCGTGAGAAAAGCAATTGATAATGTTGGTAT CCAGAAGCCACCTGGTTGGAGCTATGTGGAAATGAATGGAGCTCTTCATAAGTTTCTGGCAGGTGACAAGTCTCACCCAG AAGCCAAAGCCACTGAGCTGATGCTCATGAACATCAATATGGGAGTAAAATCAATTGGACATGCTATCAGTGCATCAAAA ATGGTGTTTGATATAGATTAA
Protein sequence (LotjaGi0g1v0002100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLHPLASSSASYDRVKALLASSCRTIQQALQIQAHMVVTGLHHDLFLSTALISFFATNHRALRHSRRLFSLVTNPDLFLW NAIIKAHSLSPNHAFSLYKSMLSSSSAPSPDSFTFPYLLKSCANARTPHLGLQLHCHLVKSRFHSHVFVANALLHFYCVF RDAHNAYKVFEQMPVRDCVSYNMMINGFVRAGRAGCSMKVLGDMRGFGIRPDEYTLVTLLSACSSLEDQRVGRQVHGLVY RELGCLGDNALLVNALVDMYAKCGCLELAERVVSGVRNGKSVVAAWTSLVSAYASRGDVEVARRLFDQMGERDVVSWTAM ISGYSHAGYFQEALELFEQLEGLGMKPDEVAVVAALSACARLGALELGRRIHLKYAAENWHCGQNGGFTCAVVDMYAKCG SIDTALDVFCKTSKDKKTTILYNSIISGLAHHGLGKYAITLFEEMRLLGLVPDGVTFVALLCACGHSGFVDEGKKLFESM STDYGVNPRMEHYGCMVDLLGRGGLLSEAYHLILNMPFKANAVIWRALLSACKVHGDVELAKLAYQELLAVEHDHGARYV MLSNMLADMDQHDEAASVRKAIDNVGIQKPPGWSYVEMNGALHKFLAGDKSHPEAKATELMLMNINMGVKSIGHAISASK MVFDID
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 21 | 132 | 112 | 4.3E-112 | – | |
| Gene3D | 88 | 248 | 161 | 2.0E-28 | ||
| ProSiteProfiles | 111 | 145 | 35 | 6.566 | ||
| PANTHER | 119 | 225 | 107 | 4.3E-112 | – | |
| ProSiteProfiles | 146 | 176 | 31 | 6.632 | ||
| ProSiteProfiles | 177 | 211 | 35 | 11.345 | ||
| Pfam | 177 | 224 | 48 | 2.2E-8 | ||
| TIGRFAM | 179 | 213 | 35 | 3.0E-7 | ||
| PANTHER | 231 | 309 | 79 | 4.3E-112 | – | |
| Gene3D | 249 | 377 | 129 | 2.0E-27 | ||
| ProSiteProfiles | 249 | 279 | 31 | 6.412 | ||
| Pfam | 254 | 272 | 19 | 0.91 | ||
| ProSiteProfiles | 282 | 312 | 31 | 8.934 | ||
| TIGRFAM | 285 | 314 | 30 | 1.2E-5 | ||
| PANTHER | 297 | 372 | 76 | 4.3E-112 | – | |
| Pfam | 313 | 360 | 48 | 6.8E-9 | ||
| ProSiteProfiles | 313 | 347 | 35 | 12.912 | ||
| TIGRFAM | 315 | 349 | 35 | 7.8E-8 | ||
| ProSiteProfiles | 348 | 382 | 35 | 5.13 | ||
| PANTHER | 381 | 583 | 203 | 4.3E-112 | – | |
| ProSiteProfiles | 385 | 415 | 31 | 5.492 | ||
| Gene3D | 389 | 601 | 213 | 3.9E-36 | ||
| ProSiteProfiles | 418 | 452 | 35 | 10.545 | ||
| Pfam | 418 | 464 | 47 | 2.0E-8 | ||
| TIGRFAM | 421 | 453 | 33 | 4.0E-6 | ||
| ProSiteProfiles | 453 | 488 | 36 | 8.528 | ||
| TIGRFAM | 455 | 487 | 33 | 7.1E-4 | ||
| ProSiteProfiles | 489 | 519 | 31 | 5.81 | ||
| ProSiteProfiles | 521 | 555 | 35 | 6.401 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi0g1v0002100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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