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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0002600 |
| Transcript ID | LotjaGi1g1v0002600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc transporter protein; TAIR: AT3G12750.1 zinc transporter 1 precursor; Swiss-Prot: sp|O81123|ZIP1_ARATH Zinc transporter 1; TrEMBL-Plants: tr|I3T7K4|I3T7K4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0002600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:648785..650317) extracted from Lotus japonicus Gifu genome v1.2.
CTCTCTTCTGATCGATAATCCTTCATTTCTGAATTTCCAAAATGAATTGCAAGTACTCTTTTGTTCTTCTTCTAATTGTT CTTCTTCCGTCTTTGGTGGTTGGAGAGTGCACATGTGAAAAAGACGATGACTCCGGTGACAAGAGTCTAGCACAAAAATA CAAAGTAGCAGCCCTTGTTTCCATTCTGATTGCAGGTGCAATCGGCGTGAACATTCCAGTGCTGGGCAGACACTTCTCAA TCTTGCGTCCAGACAATGATTTCTTTTTCATGGTGAAGGCCTTTGCCGCCGGGGTCATATTATCCACCGGTTTCATCCAC GTCCTGCCGGATGCTTTTGACAAGTTAACATCTCCCTGTCTCAATGACCATCCTTGGGGAGATTTCCCATTCACTGGATT TGTGGCGATGGTATCCGCCATTGGAACGCTCATGATTGATTCTATCGCAACCGCCTATTTCAACAAGTCTCATAGCTCCA ACGAGAAGGAAGAAAAAGTTGTTGATCTGCCTGTTCATACACATGCATCCAATGGTCATGCTCATGGTTCCACTGCTTCA TCTGCCTCAACACAACTCCTTCGCCATCGCGTTATTTCTCAGGTACCCTTAATTTTTCGGCTGAATGAAAGACTTAATTA CATGTGTGTTTGTAATTATTTTTGGTATTTGATATGTTAATTGCAGGTGTTAGAGTTAGGGATTGTGGTGCATTCTGTGA TAATTGGGATCTCTCTGGGTGCATCTGAGAGTCCTGAGACAATAAGGCCTCTAATTGCAGCCTTAACTTTCCATCAATTT TTTGAAGGCATGGGGCTCGGTGGTTGCATCTCACAGGTATATATACAAACATCTCAACTACATTATTATGCATTTTTTTT TTCAAAATAATGTACATATATAGTTTGGCTGAATCAAACTTAGTTTCTTGATAACTATTTACATATGGGCAGGCAAAGTT CAAGACCAAAGCAGTTATTGTGATGGCATTGTTCTTTTCATTGACAACGCCGGTTGGAATTGCAATTGGAATGGGGATTA CGAACGCGTACGACGAGAACAGCCAAACTGCTCTGATTGTGGAGGGGATTATGAATGCAGCATCAGCAGGGATCTTAATT TACATGTCTCTTGTGGACCTGCTTGCTGCTGATTTTATGAACCCAAGATTCCAACAAAGTAGTAAGCTTCAGTTAGGAGC CAATTTGTGTCTCCTTCTAGGGGCTGGTTGCATGTCACTATTAGCTAAATGGGCCTAAACCAATCCACCCACCTTAATTA GATTTGATTTTTGTCCTTCATTTATTTATTTTTCTGACCTAAGTTTAGTGTTTAGGAGTCAGTAGTATTTAGAGTTTCTA GTCTTCGTGATCCTCTATTTTCTAGTTTGCTTACTCCATCTTTCGGATCAATATGTCATTTCGGAATACTTTGAATTTCT TTTTTTTTTTGACAGAAGAATTTCTTTTTATTTAAGACATTTTTTTCCACTTTGTATGGAAGGCGTTAGGCTGATGCATA TATATGCGCTATG
CDS sequence (LotjaGi1g1v0002600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTGCAAGTACTCTTTTGTTCTTCTTCTAATTGTTCTTCTTCCGTCTTTGGTGGTTGGAGAGTGCACATGTGAAAA AGACGATGACTCCGGTGACAAGAGTCTAGCACAAAAATACAAAGTAGCAGCCCTTGTTTCCATTCTGATTGCAGGTGCAA TCGGCGTGAACATTCCAGTGCTGGGCAGACACTTCTCAATCTTGCGTCCAGACAATGATTTCTTTTTCATGGTGAAGGCC TTTGCCGCCGGGGTCATATTATCCACCGGTTTCATCCACGTCCTGCCGGATGCTTTTGACAAGTTAACATCTCCCTGTCT CAATGACCATCCTTGGGGAGATTTCCCATTCACTGGATTTGTGGCGATGGTATCCGCCATTGGAACGCTCATGATTGATT CTATCGCAACCGCCTATTTCAACAAGTCTCATAGCTCCAACGAGAAGGAAGAAAAAGTTGTTGATCTGCCTGTTCATACA CATGCATCCAATGGTCATGCTCATGGTTCCACTGCTTCATCTGCCTCAACACAACTCCTTCGCCATCGCGTTATTTCTCA GGTGTTAGAGTTAGGGATTGTGGTGCATTCTGTGATAATTGGGATCTCTCTGGGTGCATCTGAGAGTCCTGAGACAATAA GGCCTCTAATTGCAGCCTTAACTTTCCATCAATTTTTTGAAGGCATGGGGCTCGGTGGTTGCATCTCACAGGCAAAGTTC AAGACCAAAGCAGTTATTGTGATGGCATTGTTCTTTTCATTGACAACGCCGGTTGGAATTGCAATTGGAATGGGGATTAC GAACGCGTACGACGAGAACAGCCAAACTGCTCTGATTGTGGAGGGGATTATGAATGCAGCATCAGCAGGGATCTTAATTT ACATGTCTCTTGTGGACCTGCTTGCTGCTGATTTTATGAACCCAAGATTCCAACAAAGTAGTAAGCTTCAGTTAGGAGCC AATTTGTGTCTCCTTCTAGGGGCTGGTTGCATGTCACTATTAGCTAAATGGGCCTAA
Protein sequence (LotjaGi1g1v0002600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNCKYSFVLLLIVLLPSLVVGECTCEKDDDSGDKSLAQKYKVAALVSILIAGAIGVNIPVLGRHFSILRPDNDFFFMVKA FAAGVILSTGFIHVLPDAFDKLTSPCLNDHPWGDFPFTGFVAMVSAIGTLMIDSIATAYFNKSHSSNEKEEKVVDLPVHT HASNGHAHGSTASSASTQLLRHRVISQVLELGIVVHSVIIGISLGASESPETIRPLIAALTFHQFFEGMGLGGCISQAKF KTKAVIVMALFFSLTTPVGIAIGMGITNAYDENSQTALIVEGIMNAASAGILIYMSLVDLLAADFMNPRFQQSSKLQLGA NLCLLLGAGCMSLLAKWA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| TMHMM | 5 | 22 | 18 | - | – | |
| Phobius | 7 | 15 | 9 | - | – | |
| PANTHER | 12 | 338 | 327 | 5.5E-167 | – | |
| PANTHER | 12 | 338 | 327 | 5.5E-167 | – | |
| Phobius | 16 | 21 | 6 | - | – | |
| Phobius | 22 | 39 | 18 | - | – | |
| TIGRFAM | 23 | 338 | 316 | 4.0E-138 | ||
| Pfam | 40 | 335 | 296 | 1.7E-73 | ||
| Phobius | 40 | 62 | 23 | - | – | |
| TMHMM | 42 | 61 | 20 | - | – | |
| Phobius | 63 | 73 | 11 | - | – | |
| Phobius | 74 | 95 | 22 | - | – | |
| TMHMM | 74 | 96 | 23 | - | – | |
| Phobius | 96 | 114 | 19 | - | – | |
| Phobius | 115 | 140 | 26 | - | – | |
| TMHMM | 116 | 138 | 23 | - | – | |
| Phobius | 141 | 187 | 47 | - | – | |
| Phobius | 188 | 207 | 20 | - | – | |
| Phobius | 208 | 212 | 5 | - | – | |
| Phobius | 213 | 232 | 20 | - | – | |
| Phobius | 233 | 243 | 11 | - | – | |
| TMHMM | 244 | 266 | 23 | - | – | |
| Phobius | 244 | 266 | 23 | - | – | |
| Phobius | 267 | 285 | 19 | - | – | |
| TMHMM | 276 | 298 | 23 | - | – | |
| Phobius | 286 | 306 | 21 | - | – | |
| Phobius | 307 | 317 | 11 | - | – | |
| TMHMM | 318 | 335 | 18 | - | – | |
| Phobius | 318 | 337 | 20 | - | – | |
| Phobius | 338 | 338 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion transmembrane transporter activity | Enables the transfer of zinc (Zn) ions from one side of a membrane to the other. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion transmembrane transporter activity | Enables the transfer of metal ions from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. | ||
| Biological process | Zinc ion transmembrane transport | A process in which a zinc II ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. |
Expression pattern of LotjaGi1g1v0002600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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