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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0004100 |
| Transcript ID | LotjaGi1g1v0004100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane 9 superfamily member; TAIR: AT4G12650.1 Endomembrane protein 70 protein family; Swiss-Prot: sp|F4JRE0|TMN12_ARATH Transmembrane 9 superfamily member 12; TrEMBL-Plants: tr|A0A151RZY8|A0A151RZY8_CAJCA Transmembrane 9 superfamily member; Found in the gene: LotjaGi1g1v0004100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:764860..766955) extracted from Lotus japonicus Gifu genome v1.2.
TTTAGCCTACATTTAATTTTATATCTTTGGATGCCATCTCATTTTGAAATATTGTTATTCTGTTGTAGATTTGACGTTGA ATGCTTCGTTAGACTCATAGCTTAATTTCCCCAAACATCTACTCTGCGCAAATGGAGATCCCTTTGATCTGCTGGGTTTG CATTTCCCTCATTGTCTTTGTTCAATTTAGCAATGCTTTTTATCTTCCTGGAAGTTACATGCACACTTACTCAAATGGAG ATCCCATATATGCCAAGGTTAATTCCTTGACTTCCATTGAAACTGAGCTTCCCTTCAGCTACTACAGCCTCCCTTATTGC CAACCCCTTGGCGGGATTAAGAAAAGTGCTGAGAATCTCGGCGAACTCCTTATGGGTGACCAGATTGATAACTCCCCTTA CCTTTTCCACATGAATGTCAATCAGTCTGTCTACCTCTGCACTACACCCCCCTTGAACGAGAACGAGGTCAAGCTACTCA AACAGCGAACTCACGATCTCTATCAAGTAAATATGATCCTTGACAATCTGCCTGTCATGAGATTTGCCACTCAAAATGGG GTTAAAATCCAGTGGACCGGCTTCCCCGTCGGGTACACCCCACCTGATGGCAGTGCGGATTACATCATCAACCACCTCAA GTTTACAGTCTTGGTTCATGAGTATGAAGGAAGTGGTGTTGAAATCATCGGGACCGGCGAGGAGGGTATGGGTGTGATTT CTGAAGCTGACAAGAATAAGGCATCTGGATATGAAATTGTTGGCTTTCATGTTGTCCCTTGTAGTGTTAAACGCGATCCC GAAGCCATGACAAAGCTCCACACGTATGATGAAATGTCTAGAACAAGCTGCCCAGCTGAGCTTGACAAGTACCAAGCGGT TAGGGAACAAGAGAGGATATCATTTACATATGAAGTTGAATTTGTTAGAAGTGATATAAGATGGCCGTCGCGTTGGGATG CTTATTTAAAGATGGAGGGTGCACGAGTACATTGGTTCTCAATCCTGAATTCACTTATGGTGATCTTTTTCCTAGCTGGT ATTGTTTTTGTCATTTTCTTAAGAACTGTGAGAAGGGACTTGACAAGGTATGAGGAAATGGACAAAGAGACACAGGCTCA GATGAATGAGGAGCTTTCTGGATGGAAGCTTGTTGTGGGTGATGTATTTAGGGAGCCTGATTGCTCAAAGCTTCTCTGTG TGATGGTTGGGGATGGAGTTCAGATTCTTGGAATGGCAGCTGTTACTATTGTTTTCGCCGCCCTTGGTTTCATGTCACCT GCTTCACGGGGAATGCTACTAACGGGGATGATAATTTTATATCTTTTCCTCGGAAGTGCTGCAGGATATGTCAGTGTACG TCTCTGGAGCACCATTAAGGGAACTTCAGAAGGGTGGAGGTCAATTTCCTGGTTTGCCGCATGCTTTTTTCCTGGAATTG CGTTTGTTATTCTAACAGGACTGAATTTTATTCTCTGGAGCAGCAAAAGTACTGGTGCTATTCCTATTTCCTTGTATTTT GAGTTGATCTTCCTGTGGTTCTGCATTTCAGTGCCACTTACCCTCATTGGAGGATTTATGGGGACAAAAGCTCCACAAAT TGAATTTCCTGTGCGAACTAATCAGATTCCAAGGGAAATTCCAACACGTAAATACCCATCATGGCTTCTTGTTCTTGGTG CTGGAACTCTTCCGTTTGGAACCCTTTTCATTGAGCTTTTCTTTATCCTTTCCAGTATTTGGCTTGGGAGGTTCTATTAT GTCTTTGGCTTCTTGTCGATTGTTCTTCTATTGCTGATTATTGTTTGTGCTGAAGTGTCAGTGGTCCTCACATATATGCA TCTTTGTGTGGAAGATTGGCGGTGGTGGTGGAAGGCATTCTTTGCATCAGGCTCCGTTGCTCTTTATGTCTTCTTATACT CCATTAACTACTTGGTTTTCGACCTGCAGAGTTTGAGTGGACCTATCTCTGCTATACTTTATCTTGGCTATTCGCTGCTC ATGGCAATTGCAATCATGTTGTCAACCGGGACCATTGGCTTCCTTATGTCATTCTACTTTGTGCATTATTTGTTCTCATC AGTGAAGATAGATTGA
CDS sequence (LotjaGi1g1v0004100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGATCCCTTTGATCTGCTGGGTTTGCATTTCCCTCATTGTCTTTGTTCAATTTAGCAATGCTTTTTATCTTCCTGG AAGTTACATGCACACTTACTCAAATGGAGATCCCATATATGCCAAGGTTAATTCCTTGACTTCCATTGAAACTGAGCTTC CCTTCAGCTACTACAGCCTCCCTTATTGCCAACCCCTTGGCGGGATTAAGAAAAGTGCTGAGAATCTCGGCGAACTCCTT ATGGGTGACCAGATTGATAACTCCCCTTACCTTTTCCACATGAATGTCAATCAGTCTGTCTACCTCTGCACTACACCCCC CTTGAACGAGAACGAGGTCAAGCTACTCAAACAGCGAACTCACGATCTCTATCAAGTAAATATGATCCTTGACAATCTGC CTGTCATGAGATTTGCCACTCAAAATGGGGTTAAAATCCAGTGGACCGGCTTCCCCGTCGGGTACACCCCACCTGATGGC AGTGCGGATTACATCATCAACCACCTCAAGTTTACAGTCTTGGTTCATGAGTATGAAGGAAGTGGTGTTGAAATCATCGG GACCGGCGAGGAGGGTATGGGTGTGATTTCTGAAGCTGACAAGAATAAGGCATCTGGATATGAAATTGTTGGCTTTCATG TTGTCCCTTGTAGTGTTAAACGCGATCCCGAAGCCATGACAAAGCTCCACACGTATGATGAAATGTCTAGAACAAGCTGC CCAGCTGAGCTTGACAAGTACCAAGCGGTTAGGGAACAAGAGAGGATATCATTTACATATGAAGTTGAATTTGTTAGAAG TGATATAAGATGGCCGTCGCGTTGGGATGCTTATTTAAAGATGGAGGGTGCACGAGTACATTGGTTCTCAATCCTGAATT CACTTATGGTGATCTTTTTCCTAGCTGGTATTGTTTTTGTCATTTTCTTAAGAACTGTGAGAAGGGACTTGACAAGGTAT GAGGAAATGGACAAAGAGACACAGGCTCAGATGAATGAGGAGCTTTCTGGATGGAAGCTTGTTGTGGGTGATGTATTTAG GGAGCCTGATTGCTCAAAGCTTCTCTGTGTGATGGTTGGGGATGGAGTTCAGATTCTTGGAATGGCAGCTGTTACTATTG TTTTCGCCGCCCTTGGTTTCATGTCACCTGCTTCACGGGGAATGCTACTAACGGGGATGATAATTTTATATCTTTTCCTC GGAAGTGCTGCAGGATATGTCAGTGTACGTCTCTGGAGCACCATTAAGGGAACTTCAGAAGGGTGGAGGTCAATTTCCTG GTTTGCCGCATGCTTTTTTCCTGGAATTGCGTTTGTTATTCTAACAGGACTGAATTTTATTCTCTGGAGCAGCAAAAGTA CTGGTGCTATTCCTATTTCCTTGTATTTTGAGTTGATCTTCCTGTGGTTCTGCATTTCAGTGCCACTTACCCTCATTGGA GGATTTATGGGGACAAAAGCTCCACAAATTGAATTTCCTGTGCGAACTAATCAGATTCCAAGGGAAATTCCAACACGTAA ATACCCATCATGGCTTCTTGTTCTTGGTGCTGGAACTCTTCCGTTTGGAACCCTTTTCATTGAGCTTTTCTTTATCCTTT CCAGTATTTGGCTTGGGAGGTTCTATTATGTCTTTGGCTTCTTGTCGATTGTTCTTCTATTGCTGATTATTGTTTGTGCT GAAGTGTCAGTGGTCCTCACATATATGCATCTTTGTGTGGAAGATTGGCGGTGGTGGTGGAAGGCATTCTTTGCATCAGG CTCCGTTGCTCTTTATGTCTTCTTATACTCCATTAACTACTTGGTTTTCGACCTGCAGAGTTTGAGTGGACCTATCTCTG CTATACTTTATCTTGGCTATTCGCTGCTCATGGCAATTGCAATCATGTTGTCAACCGGGACCATTGGCTTCCTTATGTCA TTCTACTTTGTGCATTATTTGTTCTCATCAGTGAAGATAGATTGA
Protein sequence (LotjaGi1g1v0004100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIPLICWVCISLIVFVQFSNAFYLPGSYMHTYSNGDPIYAKVNSLTSIETELPFSYYSLPYCQPLGGIKKSAENLGELL MGDQIDNSPYLFHMNVNQSVYLCTTPPLNENEVKLLKQRTHDLYQVNMILDNLPVMRFATQNGVKIQWTGFPVGYTPPDG SADYIINHLKFTVLVHEYEGSGVEIIGTGEEGMGVISEADKNKASGYEIVGFHVVPCSVKRDPEAMTKLHTYDEMSRTSC PAELDKYQAVREQERISFTYEVEFVRSDIRWPSRWDAYLKMEGARVHWFSILNSLMVIFFLAGIVFVIFLRTVRRDLTRY EEMDKETQAQMNEELSGWKLVVGDVFREPDCSKLLCVMVGDGVQILGMAAVTIVFAALGFMSPASRGMLLTGMIILYLFL GSAAGYVSVRLWSTIKGTSEGWRSISWFAACFFPGIAFVILTGLNFILWSSKSTGAIPISLYFELIFLWFCISVPLTLIG GFMGTKAPQIEFPVRTNQIPREIPTRKYPSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFLSIVLLLLIIVCA EVSVVLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPISAILYLGYSLLMAIAIMLSTGTIGFLMS FYFVHYLFSSVKID
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| PANTHER | 5 | 654 | 650 | 0.0 | – | |
| PANTHER | 5 | 654 | 650 | 0.0 | ||
| Phobius | 5 | 17 | 13 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 287 | 265 | - | – | |
| Pfam | 54 | 606 | 553 | 5.2E-180 | ||
| Phobius | 288 | 310 | 23 | - | – | |
| TMHMM | 288 | 310 | 23 | - | – | |
| Phobius | 311 | 362 | 52 | - | – | |
| TMHMM | 354 | 376 | 23 | - | – | |
| Phobius | 363 | 382 | 20 | - | – | |
| Phobius | 383 | 387 | 5 | - | – | |
| Phobius | 388 | 413 | 26 | - | – | |
| TMHMM | 391 | 413 | 23 | - | – | |
| Phobius | 414 | 424 | 11 | - | – | |
| Phobius | 425 | 449 | 25 | - | – | |
| TMHMM | 425 | 447 | 23 | - | – | |
| Phobius | 450 | 460 | 11 | - | – | |
| Phobius | 461 | 483 | 23 | - | – | |
| TMHMM | 462 | 484 | 23 | - | – | |
| Phobius | 484 | 510 | 27 | - | – | |
| TMHMM | 511 | 533 | 23 | - | – | |
| Phobius | 511 | 537 | 27 | - | – | |
| Phobius | 538 | 542 | 5 | - | – | |
| TMHMM | 543 | 565 | 23 | - | – | |
| Phobius | 543 | 566 | 24 | - | – | |
| Phobius | 567 | 577 | 11 | - | – | |
| Phobius | 578 | 603 | 26 | - | – | |
| TMHMM | 578 | 600 | 23 | - | – | |
| Phobius | 604 | 614 | 11 | - | – | |
| Phobius | 615 | 648 | 34 | - | – | |
| TMHMM | 622 | 644 | 23 | - | – | |
| Phobius | 649 | 654 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0004100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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