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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0004800 |
| Transcript ID | LotjaGi1g1v0004800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SNF1-related protein kinase regulatory subunit beta-2; TAIR: AT4G16360.1 SNF1-related protein kinase regulatory subunit beta-2; Swiss-Prot: sp|Q9SCY5|KINB2_ARATH SNF1-related protein kinase regulatory subunit beta-2; TrEMBL-Plants: tr|K7KBS0|K7KBS0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0004800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:821642..824555) extracted from Lotus japonicus Gifu genome v1.2.
GAATACATATCATTAGACATTGTTTGGTTGTTCCTGATTGCAGGGCAACACAGTCCTTTAAACCAGAGTCATAATAATTA GCACACAGCAGAATCTTCCAAACTCATTGGAGAATAAAACCTTGTATCTGCTTTAAGCCAGAGAAAAGTGCCATCCTTCC TCAGAGACAGTTTGTGTGAGGGTGAGACTTGAGACTAGAATAAGGAAATAAAACAAACTTTTCTATAATAACTATGTCCC TCTACTACCTAGAGTTGATTCCTGGTTTAGTTTCAACGGTGGGTTTGCTGTATTTATGTACTGCAGAAATGGGTACGCCA TGTTGCTTTCTGATTCTTTCTTCTCTGTCTAATAATGGCTTCTTGCTGTCTTGCAGCTTCCCCTTCTCTGGATTTTTTCC ACTCTCACTAATGGGGAGTAACAGCAGAGGAAAGGATCTTGAAGGCACTTCTGGAGATAATATGATTGTGGATAACTATG AATATGAACAAGAGATGAGATTCCTACCTGCTAACTTGAATCCTGATGGTCTTTTAGATCAGTGGGCTCAGTTTCCTCCA TATGGCCCCAGAGCATATGAGCCACCATCTCCTTTTCTCATACAACAGGTCAGAGTCAGTTGGTTAAGCATGTTTGAATC AGCTTATTTTGTCTCAGAATAAATTTTGTGGCTCAGAGGCTACTTCAGTCCCAGTAGTTCCTCCCTGGAATCGATGTAGG TTATATAATCAATACTAGGAGAATTTCCAAACATGGATTTTACTTGTATCTTTTTGTGTTTAATGTTATGACAAGTAATT TCCTCTGAATATGCCACTTTTAAGTTCAAGGAAAATTTAATTTGGAAACTCCTTGGCCTTGCAGTATGTTAGATACTATA TAGTAGGCTATAATATCCCATGCTTATATAGTTTAGGGGAACAAAACTGTTGAAAGCAGTGACAATTAGCATCTATAGAA GTGGGATGGTTTTTTTGGTCTGCTATAATGTTTGATAGTGTTGTATAGAATAGTGAGATCAAAATCTGATATTGGCTTGT AGGACATATTTCAATTGATAGAAATTTTAGGTGAATTTACTACTTGACTCATGTTCACTCATTGGGTAAAAAGTAAAAAC CGTATGTGCTATAGAGGTTTGCAGCAATGCTATTTAGTATGAAGATATTACCCCAAAGGTGAGTCCAAAATAAACAATTC ACAATAATAAATGGATGGGGGTCATGTTAAAGTTTTTTTGAAAGTGTTAATGTGTTAAATTTCTGCACTTCTTAACAATT ATGCAATTTTTATTTGGCTTAATGTGTTAAATTTTCACCCACCATACCAAATTTTTTCACCTCTTAGCAATGCTAATGCC TGTTGAAAATACCAAATTTGAAATGCCTGTTTTCAAGGTCCCTGCGGTTGCAATGCAAAGACCAGGAGTGGTAGCACAAC CCCAGCAACATGCATTAGTGCAAAATGGATATGTGGGATCTAGGTTTTATAAGAAGTTGAAAAGTGCGAGGATTACATGG AACCATGCTGGTGCGGATGTTGCTGTTGTAGGATCATGGGACAATTGGAAGAGCAGGCAAGTAGTAACCATCTATGCTTT TAAATTCCAAATGTGGTCAGTTCTTGCTTTCGCAACATAATGTTTCATCTGATATCATGACATTTTACCTTTGTTCTGCC AGCGAGCCCTTGCATAGAGTAGGTCAAAGCTTTGCCATTGTTAAAAAACTTCCCCTTGGTATCTATCATTACCATTTCAT TGTAGATGGCTATTCAACACATGCTCCAGAGTTCGTATCAGTTCTTCATGACTCAGGTTATGTCTACAATATATTGAAAG TGCAGGTAATTTCATGCTTTACATAGATGATCTTTCATGGTTAACATTCTATGGATAGCGTGTTTGGTCAGTTAGAAGCC CCATAATCACTTATGGGGAGAAGTTATAAAGTGTAGTTTCTGGAGTGACGATTATTTGTATTGTATGCCAGCACGAATCC GAACAATGACATGCTTAAAGATGATCTTGCCAGTTACTTCTTCCAAGTGTTATCATTTACTATAACCATTAACATGATCA TCAATCCATTTGAAAGCTTGGCTTTGTTTGCTTCTGCTTAAGGAGAATCAGAACTAATAGCTTGTTTGGTTTCACAATTT ACTCTGAATCCAAGACACGGAGTATAATCCAAAACCGAAGTGTTATAATTAGAATTGATTCTAAAATGTTTGATTGTGGA ACCAAATATGTTCATTTTTTCTGTCTGCTGAAGGAACTATTGCACCATGGATGTACAAAAATAGGCTACTGATACCATCT GTTGATAACTCAATATCTTCCACCTTTGTACTCTTTCCTGTGTGCATACGATACACCATTTGGGCATTGTTTGTTTCTCT AAGTTTGGCCTAGCTCCATGATTAACCATTTTTGCAGGAATATTATATCCGACGAACATCTGAGACTGAAGATCCACCAT CACCACCATCAAGTTACGATAACAAATTCTTGGATGAAGATGAGTTCAAGGTTCCTCCCCCAGAACTTCCACCTCAACTA CCGGTGACAGTAAGTGATAAGCCTTCATCAATCACACATTTGGAGCTGAATCATATATACACTTACAAAAATGTTGAGGA TCAATCTGAGGAACTACGATCTACTCATTTGTTCCAAGACAAATATGCTATTACCCAGCGCTGGGAAAGATGATGAAGCA TTTTGTTTACTATATGCTATTGAACTTGTCTCGTTTAAGTGGTCTTTTTTAGGACATTTGTCAAGATCACTTGTTTGATA TGTAGGAAGTTGATTGAAATTTTGGAATAGTTAAATGAAGAATTGCTTTTCATGTAAACAACTTAAGGGAACATTATTTA TTCTGGCGGTCAATATATATATAATACATATTCA
CDS sequence (LotjaGi1g1v0004800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTAATGCCTGTTGAAAATACCAAATTTGAAATGCCTGTTTTCAAGGTCCCTGCGGTTGCAATGCAAAGACCAGGAGT GGTAGCACAACCCCAGCAACATGCATTAGTGCAAAATGGATATGTGGGATCTAGGTTTTATAAGAAGTTGAAAAGTGCGA GGATTACATGGAACCATGCTGGTGCGGATGTTGCTGTTGTAGGATCATGGGACAATTGGAAGAGCAGCGAGCCCTTGCAT AGAGTAGGTCAAAGCTTTGCCATTGTTAAAAAACTTCCCCTTGGTATCTATCATTACCATTTCATTGTAGATGGCTATTC AACACATGCTCCAGAGTTCGTATCAGTTCTTCATGACTCAGGTTATGTCTACAATATATTGAAAGTGCAGGAATATTATA TCCGACGAACATCTGAGACTGAAGATCCACCATCACCACCATCAAGTTACGATAACAAATTCTTGGATGAAGATGAGTTC AAGGTTCCTCCCCCAGAACTTCCACCTCAACTACCGGTGACAGTAAGTGATAAGCCTTCATCAATCACACATTTGGAGCT GAATCATATATACACTTACAAAAATGTTGAGGATCAATCTGAGGAACTACGATCTACTCATTTGTTCCAAGACAAATATG CTATTACCCAGCGCTGGGAAAGATGA
Protein sequence (LotjaGi1g1v0004800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLMPVENTKFEMPVFKVPAVAMQRPGVVAQPQQHALVQNGYVGSRFYKKLKSARITWNHAGADVAVVGSWDNWKSSEPLH RVGQSFAIVKKLPLGIYHYHFIVDGYSTHAPEFVSVLHDSGYVYNILKVQEYYIRRTSETEDPPSPPSSYDNKFLDEDEF KVPPPELPPQLPVTVSDKPSSITHLELNHIYTYKNVEDQSEELRSTHLFQDKYAITQRWER
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 16 | 215 | 200 | 7.6E-73 | – | |
| PANTHER | 16 | 215 | 200 | 7.6E-73 | – | |
| Gene3D | 45 | 133 | 89 | 6.7E-17 | ||
| SUPERFAMILY | 51 | 130 | 80 | 6.65E-16 | ||
| Pfam | 53 | 131 | 79 | 6.9E-22 | ||
| CDD | 54 | 129 | 76 | 1.23091E-18 | – | |
| SUPERFAMILY | 135 | 214 | 80 | 1.44E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0004800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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