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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0005300 |
Transcript ID | LotjaGi1g1v0005300.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | 3-ketoacyl-CoA thiolase; TAIR: AT5G48230.1 acetoacetyl-CoA thiolase 2; Swiss-Prot: sp|Q8S4Y1|THIC1_ARATH Acetyl-CoA acetyltransferase, cytosolic 1; TrEMBL-Plants: tr|M5WS77|M5WS77_PRUPE Uncharacterized protein; Found in the gene: LotjaGi1g1v0005300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:851589..855107) extracted from Lotus japonicus Gifu genome v1.2.
CTAGAGGTCATTCATCAAACTTTTTGGCTTAGATATATACAGCATATCAACTACATTCAACTTTGTTTCATTCATTTAAC ATTTACATTATTCTCTATATTTCTTCATTTCATCCATCATGCACAATTATAAACAAAAAATGAAACATTCAGTTTGTTTC TGCAGATGTTTGCATTGTCGGTGTTGCTCGCACACCCATGGGTGCGTTTCTTGGTACTCTGTCATCTGTACCTGCCACCA AGCTAGGCTCTGTAGCTATTGAAGGTAACTGTAAAAACCTGTGCTAGTGCTTGTTGAATTGCATTGATACGTATTGAAGA TATCTTCACATCTTATGTTGATATATGTAGCTGCTCTTAAAAGGGCCAATGTTGATCCATCACTTGTGGAAGAAGTATAT TTTGGGAATGTTCTTAGTGCAAATTTGGGGCAAGCTCCTGCCAGACAAGCTGCTCTTGGAGCAGGACTGCCCAAATCAGT AGTCTGCACTACTGTTAACAAAGTTTGTGCATCAGGAATGAAAGGTGTTCAGTTTTTTATGAAAGGATTTTTATTTGTTT CTTTGTATTTTTTTCAATCAAGAATGTGTACATTATACTTGTTCTGGTTATTTCAGCTACAATGCTTGCTGCTCAGAGTA TTCAATTAGGTATTAATGATGTTGTTGTGGCTGGTGGTATGGAGAACATGTCGAGTGCACCTAAATACCTGGCTGAAGCA AGGTTAATTTTGTCTTTTATTTGACATTTTTCTTAGGGTTAGTTCTTGTGTTGAAATAAACTGATTCTATGCTTAAAGTT CAGGAAAGGATCCCGTCTTGGACACGATTCACTTGTTGATGGGATGTTGAAAGATGGTTTGTGGGATGCCTATAAGGATG TTGGCATGGGAGTGTGTGCTGAACTGTGTGCAGATAACCATTCAATAACAAGAGAACAGCAGGTATTTTAGGATTAGTGT TTCTGTTCAGAAAGGTTTTGGCACGATCATAACAATAGATTTTTGCTGATGTCTCTGTCTTTCCCACAGGATGACCATGC GATTCAGAGTTTTGAACGTGGAATTGCTGCCCAAGATAGTAGTGCCTTTACGTGGGAAATTGCTCCAGTTGAAGTCTCTG GTGGAAGGGGAAGACCATCAACAATCGTTGATAAAGATGAAGGTCTAGGAAAGGTGATCCCCAAAATAACTTGAACCATG ATAATACTTGTTGTGTGCTTGTGGTAAGCCTACAAAATACATGACTATAAACTTTTCGTCCCCATTGAGTAATCTTAGTT TCCTGAGTATTATAAACTTTTTTAAAGAATATAGGTATTTTAAGCATGAGAATATAGATATTACATGGTATCCTTTGTAA ACACTTCTATGTCAGCAAATATAAGCAATCAATCAGGTGTGGGGATTGAAATTTGTTTTTCTATTCCCCCTTTCACACAA AGAATATTTACATGTACGGTACTTGATGCAAATTGTATTCTGTCTATATGTGCATTTGAATGTAAACCAACATATTGTTG TATTTTTCATTTTTCTATGCCAGTTTGATGCTGCCAAGTTACGCAAACTCCGACCAAGTTTCAAGGAGAGTGGGGGTTCT GTCACTGCTGGCAATGCTTCCAGCATAAGGTTTATATACTGTCATGATTTGCTCAAGTTTTTCCTGTTTGTCTTTTTCTA CTTAACTTTTTTGTATTTGGACGTTCTTGTCAATTATTTTCTTTTTATGAAGTTCATGGTTTTCGACATGATTTATTTGA CTAGTTTAGTGTTAACTTATCATTGAGGCTTGAGTGATTTAATGTGGGGAGCGAATCTGATCTGAAATCGTTATAGTGAA CTGTGACATGTATTTGATCAATTTGAGTGAATGGTCAATCATACAGTTTGCAAGCAATGCTTAGACATACATACCAGGGA GTATAGGAAGGGAACACTGCTTGTACATCTGCTGTCCATGCTTGCTAGCATAATAGCAGAGAATATCATCTGGCACTGGC AGTCGATTTTTTTGCCTATACCATCTTTTAGCCCCAAGTGATTCAGTGACATTACTGTTTGAACCTTGAAGTCAGTTTCG AGTTGTATTTATGACTTATTTAATAAATTCTATGCTTCCTTGACTATTCACTATGCTAAATCTGAATTTTCATTAGTTTA AGTGCTCAAATGCTCACAATTGGCCATGTATTTCTAGTATGTTTGTGCATGGCAAGAGCCCTTGATTTTAGTGAAAATTA AAATGCTTTTGCTTACAGTGATGGTGCTGCTGCCCTAGTTTTGGTGAGTGGAGAGAAAGCATTGAAGCTTGGGCTTCAAG TTATTGCGAAAATTACTGGATATGCTGATGCTGCTCAGGTACATAAAACATCTAAGTATGACCATACCTTCAGGTCATAA TAGAAACATGAAATGTAAAAAAAACTTATTGTTATTCACATTACGTGTAGTGTGGTATGTTAATAGTATAACTTCATGCT CATATGGGTTTGATTTGATCTCTACAGGAGCCAGAGTTATTTACAACAGCTCCAGCCATTGCCATCCCTAAAGCTATTGC CAATGCGGGGTTGGAGACTTCACAAATTGATTTCTATGAAATTAATGAAGCCTTCTCGGTAGGATTTCATGCCCAACTTT TAATTCTATTAGTTTCTCATTTTTATGACACCATGAATTTTAATTCTTCTTATTGCTGTCTATAGGTTGTGGCTCTTGCA AATCAGAAACTCCTTGGGCTTAATTCGGTGAGTTTTATCCCTTGTCATCTTGTGAAAGTTGTAATCCATGGATATCTGTG TTGTAAGCTATTTCTGATTGAGTGGGTGGTAGATTTCATGCTGTTATAGGCGCCCTCTACCCCTCTTTGTACTGTAGAAC ATGTAAAATTTGTCTGTGGTCCATAATTGGTCTTTATCTTGGCCATTAATGGCTCAATACTTCCATTTATTCCTTTTACT CAAGTAACTAATTTGCAGGAAAAAGTAAATGTACATGGCGGAGCTGTATCATTGGGTCATCCTCTTGGTTGCAGTGGTGC TCGTATCCTAGTGACGCTTTTGGGGGTATGTTCAGTTGATAACTTTGATTACTTTACGGTATTAACATACACTCACAAGA AATGAAAAGTTGCTATTGGAAAGGAAAGTGCTTATTTTATTCTTTTAAATTTATCTGGTATAAGAAATCTTTTTGTTTCC AAATAATTTTTTATTCTTATAATACATTAAACCCTAATCAAGTATGGAGAGTAATTTCTTATGAGAGTAACAAGAGAAAA TATTGAGCATTAAATCTTACATGTATTAGAGTCATGTGATTTATTATGTTATATTTAAATAGCATATTAGCCTGATTTCC GTTTATCATATCTTCTGTAATATGGTATGTTCCTCTTGATTCAGCTAGTCTAATAGTCACTTCATGCAGGTACTGAAGCA GAAAAATGGGAAATACGGTGTTGGTGGCGTTTGTAATGGAGGAGGTGGTGCATCTGCCCTTGTTGTGGAACTTCTGTAA
CDS sequence (LotjaGi1g1v0005300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGCGTTTCTTGGTACTCTGTCATCTGTACCTGCCACCAAGCTAGGCTCTGTAGCTATTGAAGCTGCTCTTAAAAG GGCCAATGTTGATCCATCACTTGTGGAAGAAGTATATTTTGGGAATGTTCTTAGTGCAAATTTGGGGCAAGCTCCTGCCA GACAAGCTGCTCTTGGAGCAGGACTGCCCAAATCAGTAGTCTGCACTACTGTTAACAAAGTTTGTGCATCAGGAATGAAA GCTACAATGCTTGCTGCTCAGAGTATTCAATTAGGTATTAATGATGTTGTTGTGGCTGGTGGTATGGAGAACATGTCGAG TGCACCTAAATACCTGGCTGAAGCAAGGAAAGGATCCCGTCTTGGACACGATTCACTTGTTGATGGGATGTTGAAAGATG GTTTGTGGGATGCCTATAAGGATGTTGGCATGGGAGTGTGTGCTGAACTGTGTGCAGATAACCATTCAATAACAAGAGAA CAGCAGGATGACCATGCGATTCAGAGTTTTGAACGTGGAATTGCTGCCCAAGATAGTAGTGCCTTTACGTGGGAAATTGC TCCAGTTGAAGTCTCTGGTGGAAGGGGAAGACCATCAACAATCGTTGATAAAGATGAAGGTCTAGGAAAGTTTGATGCTG CCAAGTTACGCAAACTCCGACCAAGTTTCAAGGAGAGTGGGGGTTCTGTCACTGCTGGCAATGCTTCCAGCATAAGTGAT GGTGCTGCTGCCCTAGTTTTGGTGAGTGGAGAGAAAGCATTGAAGCTTGGGCTTCAAGTTATTGCGAAAATTACTGGATA TGCTGATGCTGCTCAGGAGCCAGAGTTATTTACAACAGCTCCAGCCATTGCCATCCCTAAAGCTATTGCCAATGCGGGGT TGGAGACTTCACAAATTGATTTCTATGAAATTAATGAAGCCTTCTCGGTTGTGGCTCTTGCAAATCAGAAACTCCTTGGG CTTAATTCGGAAAAAGTAAATGTACATGGCGGAGCTGTATCATTGGGTCATCCTCTTGGTTGCAGTGGTGCTCGTATCCT AGTGACGCTTTTGGGGGTACTGAAGCAGAAAAATGGGAAATACGGTGTTGGTGGCGTTTGTAATGGAGGAGGTGGTGCAT CTGCCCTTGTTGTGGAACTTCTGTAA
Protein sequence (LotjaGi1g1v0005300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGAFLGTLSSVPATKLGSVAIEAALKRANVDPSLVEEVYFGNVLSANLGQAPARQAALGAGLPKSVVCTTVNKVCASGMK ATMLAAQSIQLGINDVVVAGGMENMSSAPKYLAEARKGSRLGHDSLVDGMLKDGLWDAYKDVGMGVCAELCADNHSITRE QQDDHAIQSFERGIAAQDSSAFTWEIAPVEVSGGRGRPSTIVDKDEGLGKFDAAKLRKLRPSFKESGGSVTAGNASSISD GAAALVLVSGEKALKLGLQVIAKITGYADAAQEPELFTTAPAIAIPKAIANAGLETSQIDFYEINEAFSVVALANQKLLG LNSEKVNVHGGAVSLGHPLGCSGARILVTLLGVLKQKNGKYGVGGVCNGGGGASALVVELL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 381 | 381 | 2.8E-243 | – | |
PANTHER | 1 | 381 | 381 | 2.8E-243 | – | |
PIRSF | 1 | 381 | 381 | 2.7E-111 | ||
CDD | 1 | 361 | 361 | 8.10057E-169 | ||
Pfam | 1 | 249 | 249 | 1.8E-84 | ||
Gene3D | 1 | 264 | 264 | 2.3E-134 | ||
TIGRFAM | 2 | 379 | 378 | 1.0E-120 | ||
SUPERFAMILY | 2 | 258 | 257 | 9.52E-68 | ||
Gene3D | 113 | 378 | 266 | 2.3E-134 | ||
Pfam | 259 | 379 | 121 | 4.4E-45 | ||
SUPERFAMILY | 260 | 380 | 121 | 2.37E-37 | ||
ProSitePatterns | 327 | 343 | 17 | - | ||
ProSitePatterns | 362 | 375 | 14 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
Molecular function | Transferase activity, transferring acyl groups other than amino-acyl groups | Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi1g1v0005300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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