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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0006700 |
| Transcript ID | LotjaGi1g1v0006700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD40 repeat-like superfamily protein; TAIR: AT4G18905.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9P775|YBEG_SCHPO Uncharacterized WD repeat-containing protein C17D11.16; TrEMBL-Plants: tr|I1JJS2|I1JJS2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0006700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:972091..977021) extracted from Lotus japonicus Gifu genome v1.2.
TGGGCCTCTAAACCCTTTCTCTTTATTTTTCTTCTTCCTTCACTTTCTCTCACTTTATTCCAAACCCTCTCTGTTTCTCT CTCTAACTCGCCGCTGCCACCGTTTCCTTGCGGCGCCAATCATGATTGCGGCAATTTCATGGATACCGAAAGGTGCATCG AAGGCGGAACCCGTTCTCGCTGCACCTCCTTCCAAGGAAGAAGTTGAAGAACTCATCACCCTCCACGCTCAGAGGTGAAG CCCTTACCTCATCTTCTTCTACTACTACTACTTCTTGTTCTATATTTATATTTGTATTTTTATGTACAGTGTGATGGAGG AAGAGAGTGATAATGAAGATGAGATGGTGGATGAAGGTGATACCAGCAACAACAAACACAGTGAAGAAGTTGCGCAGGCA TTAGCCGTCGCGAATGCTATTGGCAAAACCTCCACGGATCAATATGACGATATTGCCCTTGCCCTCAAGGCCCTCAACAT GGATAATTATGATGATGAGGAAGATGGTAAAATCTATCTATCTATAAATAGTGTTTGTTCATTTTGATTGATGCTGCTTT ATTTATTATGTTTGTTGATAATTTGAACATTCTGGTTATATTAGGAGTGGAGCTATTTAGTTCTGGGGTTGGTGATCTTT ACTATGGAAGCAACGAAGAGGACCCATATATCAAAGATAAAAATGTGCATATTCCCAACACTTACTTTATTTAACTTGTC TTGCACTTACCCTTTTCATTCAGCATCAACAACATTTGTTTTTTCAGGATGATGATGAGGAAGAGCTTGAAGATTTGATC ATTCATCCGACTGATTCGGTCATTGTTTGTGCGCGTTATGAGGATGACCTCAATCTTCTTGAGGTAACTGCTTAAATTGC CTGCTTTTAAGTGATTGGTGGTGTTATACTCCAACCTTCTTATCTATCCTGTTACTAGGCTTAATAACTGTTTTCTTTCT GCCCTGGCAGGTTTGGATACTAGAGGATGCCGGTACACCTGAAATGAACACGTATACTCATCATGATATCATAATTCCAG CATTTCCCCTCTGCACTGCTTGGCTTGACTGCCCCCTTAAAGGAGGAGAAAAAGGTCAGAACTATGGGTGCTTCCGAACC TCTGGTGTCTATATTTGTCTTGATTATGTTGATTGATTCATTGCATGTTTTGTCCAATTGTATGTTTTCTTCCTTTTCAT GCTCCTGTGAACTTTCTAAGTGATGTGCTATGATAATTTCTACCTTCATTTTAGTGTGCCAAAAACATGATCAGTACATT TTTCACCGAAAGGTGAAGCCAAAAAGCTTTAGAGAATGTTGGTTTATGCCATGGTATTAGAGCCTCTAAGATGATCTGAT GAAGTGAATTAGAGTTTCCCCATATTTCAAATAAAAATTAGCTAGGTGAGCCAGTGATAAAAGATATTTCAGGTGTCTTT ACAATGCAACTTAAGCTTTTGAGATAGTTGATTCATGACAAAAAGATTTCTTCCAGGGTTGGCTAATTGTTTCTGTTACT GGGTTGCCTAAAATCACCTCCGTCACTCTTATAAATATGTGCTTAAAATTTGTCTCGATATTTACTTGATGCCTTGCATT ATCTTATTATCCTAATATAACTTCATTATGATAGCAGGGAACTTCTTAGCTGTTGGATCAATGGAACCTTCCATAGAAAT TTGGGACCTTGATGTTGTAAGTAGATTTAGAACATAAATCTAACTTCACTGTCTGCAACTTCATTTACGCAAATAGATAT CTGTTTGCAGAATACCTTACAACTTCTCTTTGTTCTCAGCTTGATGAGGTTCAGCCATGCGTGGTGTTGGGTGGCATTGA GAAAAAGAAAAAGGGGAAAGCAGGGACAAAGGTTTTTTCTACATTCTTGTCAATGTCAATTACCTCTTTCATTTTCAAAT GGCAACATGCTTAATTATGATTTATTTATAGAAGTTGCTTGTGTTTTGCTATTTGAAAATTTAACTGCAGCAAGTTGCTA TTAACTGTTCATATTTCCAAGTCATAGACCCATTATTTATGGGAATTATTTGGTGAATGGTTATACATAATTGAGAGCAG CTGCATGCTATCTGTGCATGTATGTACATTTTTACTTTTTAGCCTATTCTTTCCAAAATAAAAATGTGATTCCTGAATTT CCTAACTATATAATATTTCAATTTGGGTAGCATTAGATGAAACTGAAAATATAGATGTCTTATGCTGTTGTGTATATGAG GATCGAATTTATTATTCTCAACTTCTCTCACTTGCTTTGCTTGACAATTTGGTTGTACCTTCTAAATTTAGACACCCGGC ATGTCCCATGTGAAGCTTTCAAAGCTATATTGATTAACATTTTGAAAGAATCTGCATTCTTCATGATTTTCTTTAATCCT TTTAGACTTGAACCAAACTACTCTGCCCATTTCTTTTGATTAAAATTTGAGTTGAAGCCTTTATGTAAACCTCTTTTTCT GATTCTGCAATTCGTTTTGTGGTAGAAATCAATCAAATACAAAGATGGCAGTCACACTGACTCAGTACTTGGTCTTGCAT GGAACAAGGAGTACAGGTTTGTTAAATATTTAAATTGAGTTCTGATTTTATTTATTAATTTCTTTTAACTATCTTCCTTG ACACTTTTCTTGATATCATTCTTAAAATATCCAGGAATATACTTGCAAGTGCCAGTGCTGACAAGCGAGTAAAGATTTGG GATGTTGTTGCTGAGAAGTGTGATATTACGATGGAGCACCACACTGACAAGGCAAGAATTAAGCTAAAGCACATATCATT TTTATTATGAGGTCATGTTATTGAAAAAATAAAAAAAACCTCTTCGAGTGCACATGCTTTTTTAGAATCATTACACATGT GAACTTTCGAAACAGGATTTACACATAAATAGATTTTGGTGGTCTTTTAATACACAATTATAAAGCAAGCTTGAGCAGTT GTGGTATGTAATCATCAGCTTCAATTTTAAAATGATTTATCAAATATGGATATGTAAATGTGGATTAAACAATTTTTTGA ATTTATCTTCGGGCTTTGTTGAGCAAAGCTCCACAATGCTGATAAGGGAAAATATGTTGCATTTTCTTAATCTAACCATG AAATGTCATATTTTTTTTCTGTCATCAACTAATTTAAATTATTTGATTCAATATGTTTAATGATGCCTTTCAAGTTTATC TCATGCCCACTTGTCCTCACAGGTTCAAGCAGTTGCTTGGAATCATTTTCAACCCCAGGTTCTTCTTACTGGTTCGTTTG ATCATACTGTTGCCTTGGTAATGATCCGTTGGTCCTTGGTTACTCTGCTTTTCTTTATATTCCTCTGGCATTTGATTACT TATTATACATTTATAGTGTACTCTTTGTATATTCATGTGCGCAAAGAGATATTCCATTTAAAAATGAATATATTTGAACT TTAAAAGTCTTGGCTTTTAATTCTACTACACTTTGCAGAAGGATGGAAGGATGCCATCACATTCTGGCTATAGGTGGTCA GTCAATTCTGATGTAGAAAGCTTGGCATGGGATCCTCACACAGAACACTCTTTTGTGGTATGTTTTTGTAATTAACACTA ACATTATTTTTGTTTTTCAATTTCTGATGAAGCATACTATTTTTTTTGCTGCTTTGATAATAGAAACTGCTTTCATTCTG TTGGCAACTAACTTCCTCATATGTTTTTTTAATTTACTTATTCTTATTCTGTCATATGAACTCTTTATTTTTTTCTCTTG TATGCACAGGTATTAGCTTTTACTAATTGTGATTTAATTGTTCTGTTAGGTGAGTCTTGATGATGGCACTGTCAAGTGTT TTGATATTCGAACTGCCCAGTCTAATCCCACATCTGAGCTGAGTTCTGCAGCTTCTACTTTTACCCTCCATGCACATGAC AAAGCTGTTACCTCAGTATCCTATAATCCGTCAGCACCCAATGTATGTATCTTCAACATTTTTGTGATAATAGCTACTTA TTATGAACTTGAGATTAACCCTTCCCTATTCACATGACCCCATGCAGCTTCTTGCCACTGGATCCATGGACAAAACGGTA ATAGTCTGCTCAAATTACTATTCTCCTTTAAAATGCACTGTGGATTGTAATTCATCGTATTTGACTGCTATTACTTCTCA CAGGTAAAGCTTTGGGATTTGTCGAACAACCAACCATCTTGTGTAGCATCAAAAAATCCGAAAGTAGTAAGTTTCTTTCT CTACCTAACGGATGCATGTATCTCTGATGGGAAAGTTTTCTACGAATCATGACTTTTTTACTTGATGCTGATGACTTTTT TTTATTTTGTTTGTTAGGGGGCTGTGTTTTCTGTTGTTTTCTCACAGGATAACCCCTTCTTGTTGGCTATTGGAGGCTCG AAGGGAGACTTGGATGTAAGTGAAAAGGGTCAATGAACTTTTATTACTTTTGTATCTCTTTGCATGAAATTGACTGCTGT AACTAATCATTTTGTAGGTATGGAACACCTTATCTGAATCCGGGGTCTCTCAAAGATTTAAGAATAGAACTCAATCTGCG TCTTGATTGATATTGAGTTTTAGTCTCCCTTCCCGCCCTGACCCTGAAAGAAAATATTCAGGCTGATAACTGCACAAGTT GTGTTGTAGGTATCAAAATTTTGGAACTCCGTAAAATGCGACATTTGCACTCTCCTTAAGAGAGATATGATGATTTATTA TAATGGTTTCTATTCCCTTATTACGTCCCTTAGTGCATCTAGTAGTTTAGAATTACTAAGTTTTATTAGTAGTAGTTGTG AAATAGGTTGAATGGATATAATTAATGGAGTGATACTGTTTTCTTGCTATATTTCCACGTCATTATAAATTCCAATTTTC TGTTAATTTTTATTTATTTACTAACCAAAGAGGAAAGAATTTAAACCTTTC
CDS sequence (LotjaGi1g1v0006700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGCGGCAATTTCATGGATACCGAAAGGTGCATCGAAGGCGGAACCCGTTCTCGCTGCACCTCCTTCCAAGGAAGA AGTTGAAGAACTCATCACCCTCCACGCTCAGAGTGTGATGGAGGAAGAGAGTGATAATGAAGATGAGATGGTGGATGAAG GTGATACCAGCAACAACAAACACAGTGAAGAAGTTGCGCAGGCATTAGCCGTCGCGAATGCTATTGGCAAAACCTCCACG GATCAATATGACGATATTGCCCTTGCCCTCAAGGCCCTCAACATGGATAATTATGATGATGAGGAAGATGGAGTGGAGCT ATTTAGTTCTGGGGTTGGTGATCTTTACTATGGAAGCAACGAAGAGGACCCATATATCAAAGATAAAAATGATGATGATG AGGAAGAGCTTGAAGATTTGATCATTCATCCGACTGATTCGGTCATTGTTTGTGCGCGTTATGAGGATGACCTCAATCTT CTTGAGGTTTGGATACTAGAGGATGCCGGTACACCTGAAATGAACACGTATACTCATCATGATATCATAATTCCAGCATT TCCCCTCTGCACTGCTTGGCTTGACTGCCCCCTTAAAGGAGGAGAAAAAGGGAACTTCTTAGCTGTTGGATCAATGGAAC CTTCCATAGAAATTTGGGACCTTGATGTTCTTGATGAGGTTCAGCCATGCGTGGTGTTGGGTGGCATTGAGAAAAAGAAA AAGGGGAAAGCAGGGACAAAGAAATCAATCAAATACAAAGATGGCAGTCACACTGACTCAGTACTTGGTCTTGCATGGAA CAAGGAGTACAGGAATATACTTGCAAGTGCCAGTGCTGACAAGCGAGTAAAGATTTGGGATGTTGTTGCTGAGAAGTGTG ATATTACGATGGAGCACCACACTGACAAGGTTCAAGCAGTTGCTTGGAATCATTTTCAACCCCAGGTTCTTCTTACTGGT TCGTTTGATCATACTGTTGCCTTGAAGGATGGAAGGATGCCATCACATTCTGGCTATAGGTGGTCAGTCAATTCTGATGT AGAAAGCTTGGCATGGGATCCTCACACAGAACACTCTTTTGTGGTGAGTCTTGATGATGGCACTGTCAAGTGTTTTGATA TTCGAACTGCCCAGTCTAATCCCACATCTGAGCTGAGTTCTGCAGCTTCTACTTTTACCCTCCATGCACATGACAAAGCT GTTACCTCAGTATCCTATAATCCGTCAGCACCCAATCTTCTTGCCACTGGATCCATGGACAAAACGGTAAAGCTTTGGGA TTTGTCGAACAACCAACCATCTTGTGTAGCATCAAAAAATCCGAAAGTAGGGGCTGTGTTTTCTGTTGTTTTCTCACAGG ATAACCCCTTCTTGTTGGCTATTGGAGGCTCGAAGGGAGACTTGGATGTATGGAACACCTTATCTGAATCCGGGGTCTCT CAAAGATTTAAGAATAGAACTCAATCTGCGTCTTGA
Protein sequence (LotjaGi1g1v0006700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIAAISWIPKGASKAEPVLAAPPSKEEVEELITLHAQSVMEEESDNEDEMVDEGDTSNNKHSEEVAQALAVANAIGKTST DQYDDIALALKALNMDNYDDEEDGVELFSSGVGDLYYGSNEEDPYIKDKNDDDEEELEDLIIHPTDSVIVCARYEDDLNL LEVWILEDAGTPEMNTYTHHDIIIPAFPLCTAWLDCPLKGGEKGNFLAVGSMEPSIEIWDLDVLDEVQPCVVLGGIEKKK KGKAGTKKSIKYKDGSHTDSVLGLAWNKEYRNILASASADKRVKIWDVVAEKCDITMEHHTDKVQAVAWNHFQPQVLLTG SFDHTVALKDGRMPSHSGYRWSVNSDVESLAWDPHTEHSFVVSLDDGTVKCFDIRTAQSNPTSELSSAASTFTLHAHDKA VTSVSYNPSAPNLLATGSMDKTVKLWDLSNNQPSCVASKNPKVGAVFSVVFSQDNPFLLAIGGSKGDLDVWNTLSESGVS QRFKNRTQSAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 486 | 486 | 4.9E-195 | – | |
| PANTHER | 1 | 486 | 486 | 4.9E-195 | – | |
| MobiDBLite | 38 | 58 | 21 | - | – | |
| Gene3D | 47 | 337 | 291 | 2.7E-24 | ||
| SUPERFAMILY | 203 | 473 | 271 | 2.0E-47 | ||
| PRINTS | 207 | 221 | 15 | 2.5E-7 | ||
| SMART | 245 | 287 | 43 | 6.8E-6 | ||
| ProSiteProfiles | 254 | 288 | 35 | 12.213 | ||
| ProSiteProfiles | 254 | 481 | 228 | 30.347 | ||
| Pfam | 256 | 287 | 32 | 0.003 | ||
| ProSitePatterns | 274 | 288 | 15 | - | ||
| PRINTS | 274 | 288 | 15 | 2.5E-7 | ||
| SMART | 290 | 330 | 41 | 0.0075 | ||
| SMART | 334 | 373 | 40 | 2.4 | ||
| Gene3D | 338 | 489 | 152 | 6.5E-30 | ||
| SMART | 387 | 427 | 41 | 9.6E-11 | ||
| Pfam | 392 | 427 | 36 | 6.4E-7 | ||
| ProSiteProfiles | 394 | 436 | 43 | 16.089 | ||
| ProSitePatterns | 414 | 428 | 15 | - | ||
| PRINTS | 414 | 428 | 15 | 2.5E-7 | ||
| SMART | 432 | 472 | 41 | 0.83 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0006700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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