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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0007700 |
| Transcript ID | LotjaGi1g1v0007700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT2G40720.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q7XJN6|PP197_ARATH Pentatricopeptide repeat-containing protein At2g40720; TrEMBL-Plants: tr|A0A0S3SU78|A0A0S3SU78_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0007700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1041219..1043888) extracted from Lotus japonicus Gifu genome v1.2.
TATAACACAAAAGCATTAAACTCATCCCATCTTATTCCATTCACTAACATTAACATAGGCTAGCTTCCAAAAGTGATATG TTTCACCATAATCTTCCTCACACATATCCTTAATAGGTCCAAGTTCAATAAGAGTCTGCCCCATTATACCAGTGGTTGAA GCATTGGTCCAAAATATTATTCCAACTTCAATGCTTCTTTCTCCTGCATGCGCTTTACATCTCCCTCCAACCCTCAAACT GAAACCAAATGGCCTCCACCCCTCTTTTCCTAAGCCCCCACAATGCCTCAAACTTGGTCATTCTGCCGTTTCAGCATGTG ACCATAATTTTCATCCTCATGACTGGCCTCAGCTCCTTAAATTCTCAATTGGGTCACAAGATTATAATCTAGCTCAGGCA ATTCACGGGTACTTAGTCAAATCTGGTAATGAAGGTGACCTGTTTGTGGATAACAATCTTGTCAACCTCTACTCAAAGTT CAATAAAATGGGTGATGCACAGAGGATATTTGATGAAATGCTTGTTAGAAGCATAGTCACTTGGACTACCCTCATGAAGG GGTATTTGAAGACTGGTGATCTTGAAACTGTTTTCAGCATTGCTCGTGATATGTGTATGCTTGGAGAGAATTTCAATGAG CACACCTGCTCAGTGGTCCTGCAGGCATGCAGGTCTGGCGAAGATCGTGTTTTCGGTGAGCAGATTCATGCTTTTGTTAT AAAAAATGGGCTTCAGGAGAATGTTGTTGTGGCCACTTCACTTGTTTATATGTACTCTAGGAGTGGCCAGTTGGATCTTG CAGAAAAAGTGTTCTGTGGCATTAGTGTTAAAGATGCTCAGTGCATAAATTATATGATTTTGGAATATGGAAAGGCAGGC TTGGGTGATAAGGCATTTCAGACATTTTGGGATATGATGAACTCTGGACTGAATCCAAGTGATTATACGTTCACAAATTT AATCAGTGCTTGTGATTCCAGTATAGGATTCGACTTACCAAAGCAACTGCATGGGCTTGCAGTGAAGTATGGTTTTATGA GCGAAACATCTGTTGGAAATGCTGTAATTACAATGTATGGACAACATGGAATGGTGAAAGAGGCTGAGAGAGTGTTTGTT GAAATGGATGATAGGTCTTTAATTTCCTGGTCTGCACTCCTATCAGCATTAGTTAAGAACGGCTATGCCAACAGAGCCCT TGAATTTTTCCAAGATATGCTTCAGATTGGTGTACCTCTTGATTCTGGTTGCTTGAGCACTGTACTTGATGGATGTTCAG AATGCAATAATTTAAAATTTGGAATCCAAATTCATGGACTTACTGTGAAGCTTGGTCATGTCTATGATGTAAATAGCGGT ACTGCTTTAGTTGATTTATATGCTAAATGTCGAAGTTTGAAGTCTGCAAGAGTGGTTTTTGACAGGATACCAAATAAAAC TATTGCTTCATTTAATGCCATTCTAGTTGGATACTTAAATTCAAAAACAAGAGATGATGAAGAAGATCCTATGGTTTTTT TCAGCAAACTAAGATTCAATGGCGTGAGACCAGATCGGGTCTCATTTTCCCGGCTTCTTAGTTTGTCCGCTAATCAAGCA TGCATAGTAGCTGGGAAGAGTCTCCATGCTTACACTATAAAGGTGGGACTTGATGATGATACTGCTGTGGGCAATGCTAT AATTACCATGTATGCTAAATGTGGCAGTGTTCAGGATGCTTATAAGATATTTACATGTATGAACCATGATCGTGTGACCT GGAATGCCATGATTTCTGCATATGCCCTTCATGGTGAAGCAAATAACGCGCTTTCGCTATTTGAGGATATGAAAGAACAG GGATTTGCCCCAGATGAGATTACAATATTGGCTGTTCTGCAAGCATGTACTTACTCAGGTTTATGGGAAGTTGGGTTGTG CATATTCAATGAATTAGAATCAAAGTATGGGATCAAGCCACTGGCTGAGCACCTCTCTTGCATGGTTGACCTTTTAGGTC GAGCCGGAAATCTATCTAGAGCCATGGATATCATCAACAAAAGCCCGTTTTCTGCATCATCTTTGCTTTGGAGGACTTTC GTCAATGCCTGTAAGCTGTGTGGTGATATGGAACTTGGAATATGGGCCTCCAAGAAGTTACTTGACTTAGCACCTAATGA GGCCTCTTCTTATATACTTGTAGCAAATATGTATGCTCAAGGAGGCATGCCAGAAGAGGCTGCCAAAGTGAGAACAACTA TGAATGACCTGAAGTTAATCAAAGAAACTGGTTCGAGCTGGATTGAGATAGATAATGAAGTTCACTATTTTATTGCAAGT GACAAAAACCACCCTGAAAGTAGAGAAATATATGTGAATTTGGATCTGTTAAGCGATGAAGTGTGTTGGAGCAGTGAGAA CAGAAATATTCTCCCACTAGTTTCAGATTCCTTGTGACATATTATTGTAGTTGCTCTAGTTCATGAGCAAGAGTAAGCAC ATGTGTCAATATTTGCCTGTAGTGACAGTAGACTGTAGTTGCCTTCGATTGTGTTATTGCCTCGAGCAACCTATCTTTCT ACCATCTCACATTAACATTAAATATAAATATCATTATGTTACAGAATGTCTGGAATTGAGAAAATCAAAATTATCAAGCA ACAAATTTGCTACTTCTATTCTACGAGGAA
CDS sequence (LotjaGi1g1v0007700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCTTTCTCCTGCATGCGCTTTACATCTCCCTCCAACCCTCAAACTGAAACCAAATGGCCTCCACCCCTCTTTTCC TAAGCCCCCACAATGCCTCAAACTTGGTCATTCTGCCGTTTCAGCATGTGACCATAATTTTCATCCTCATGACTGGCCTC AGCTCCTTAAATTCTCAATTGGGTCACAAGATTATAATCTAGCTCAGGCAATTCACGGGTACTTAGTCAAATCTGGTAAT GAAGGTGACCTGTTTGTGGATAACAATCTTGTCAACCTCTACTCAAAGTTCAATAAAATGGGTGATGCACAGAGGATATT TGATGAAATGCTTGTTAGAAGCATAGTCACTTGGACTACCCTCATGAAGGGGTATTTGAAGACTGGTGATCTTGAAACTG TTTTCAGCATTGCTCGTGATATGTGTATGCTTGGAGAGAATTTCAATGAGCACACCTGCTCAGTGGTCCTGCAGGCATGC AGGTCTGGCGAAGATCGTGTTTTCGGTGAGCAGATTCATGCTTTTGTTATAAAAAATGGGCTTCAGGAGAATGTTGTTGT GGCCACTTCACTTGTTTATATGTACTCTAGGAGTGGCCAGTTGGATCTTGCAGAAAAAGTGTTCTGTGGCATTAGTGTTA AAGATGCTCAGTGCATAAATTATATGATTTTGGAATATGGAAAGGCAGGCTTGGGTGATAAGGCATTTCAGACATTTTGG GATATGATGAACTCTGGACTGAATCCAAGTGATTATACGTTCACAAATTTAATCAGTGCTTGTGATTCCAGTATAGGATT CGACTTACCAAAGCAACTGCATGGGCTTGCAGTGAAGTATGGTTTTATGAGCGAAACATCTGTTGGAAATGCTGTAATTA CAATGTATGGACAACATGGAATGGTGAAAGAGGCTGAGAGAGTGTTTGTTGAAATGGATGATAGGTCTTTAATTTCCTGG TCTGCACTCCTATCAGCATTAGTTAAGAACGGCTATGCCAACAGAGCCCTTGAATTTTTCCAAGATATGCTTCAGATTGG TGTACCTCTTGATTCTGGTTGCTTGAGCACTGTACTTGATGGATGTTCAGAATGCAATAATTTAAAATTTGGAATCCAAA TTCATGGACTTACTGTGAAGCTTGGTCATGTCTATGATGTAAATAGCGGTACTGCTTTAGTTGATTTATATGCTAAATGT CGAAGTTTGAAGTCTGCAAGAGTGGTTTTTGACAGGATACCAAATAAAACTATTGCTTCATTTAATGCCATTCTAGTTGG ATACTTAAATTCAAAAACAAGAGATGATGAAGAAGATCCTATGGTTTTTTTCAGCAAACTAAGATTCAATGGCGTGAGAC CAGATCGGGTCTCATTTTCCCGGCTTCTTAGTTTGTCCGCTAATCAAGCATGCATAGTAGCTGGGAAGAGTCTCCATGCT TACACTATAAAGGTGGGACTTGATGATGATACTGCTGTGGGCAATGCTATAATTACCATGTATGCTAAATGTGGCAGTGT TCAGGATGCTTATAAGATATTTACATGTATGAACCATGATCGTGTGACCTGGAATGCCATGATTTCTGCATATGCCCTTC ATGGTGAAGCAAATAACGCGCTTTCGCTATTTGAGGATATGAAAGAACAGGGATTTGCCCCAGATGAGATTACAATATTG GCTGTTCTGCAAGCATGTACTTACTCAGGTTTATGGGAAGTTGGGTTGTGCATATTCAATGAATTAGAATCAAAGTATGG GATCAAGCCACTGGCTGAGCACCTCTCTTGCATGGTTGACCTTTTAGGTCGAGCCGGAAATCTATCTAGAGCCATGGATA TCATCAACAAAAGCCCGTTTTCTGCATCATCTTTGCTTTGGAGGACTTTCGTCAATGCCTGTAAGCTGTGTGGTGATATG GAACTTGGAATATGGGCCTCCAAGAAGTTACTTGACTTAGCACCTAATGAGGCCTCTTCTTATATACTTGTAGCAAATAT GTATGCTCAAGGAGGCATGCCAGAAGAGGCTGCCAAAGTGAGAACAACTATGAATGACCTGAAGTTAATCAAAGAAACTG GTTCGAGCTGGATTGAGATAGATAATGAAGTTCACTATTTTATTGCAAGTGACAAAAACCACCCTGAAAGTAGAGAAATA TATGTGAATTTGGATCTGTTAAGCGATGAAGTGTGTTGGAGCAGTGAGAACAGAAATATTCTCCCACTAGTTTCAGATTC CTTGTGA
Protein sequence (LotjaGi1g1v0007700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLSPACALHLPPTLKLKPNGLHPSFPKPPQCLKLGHSAVSACDHNFHPHDWPQLLKFSIGSQDYNLAQAIHGYLVKSGN EGDLFVDNNLVNLYSKFNKMGDAQRIFDEMLVRSIVTWTTLMKGYLKTGDLETVFSIARDMCMLGENFNEHTCSVVLQAC RSGEDRVFGEQIHAFVIKNGLQENVVVATSLVYMYSRSGQLDLAEKVFCGISVKDAQCINYMILEYGKAGLGDKAFQTFW DMMNSGLNPSDYTFTNLISACDSSIGFDLPKQLHGLAVKYGFMSETSVGNAVITMYGQHGMVKEAERVFVEMDDRSLISW SALLSALVKNGYANRALEFFQDMLQIGVPLDSGCLSTVLDGCSECNNLKFGIQIHGLTVKLGHVYDVNSGTALVDLYAKC RSLKSARVVFDRIPNKTIASFNAILVGYLNSKTRDDEEDPMVFFSKLRFNGVRPDRVSFSRLLSLSANQACIVAGKSLHA YTIKVGLDDDTAVGNAIITMYAKCGSVQDAYKIFTCMNHDRVTWNAMISAYALHGEANNALSLFEDMKEQGFAPDEITIL AVLQACTYSGLWEVGLCIFNELESKYGIKPLAEHLSCMVDLLGRAGNLSRAMDIINKSPFSASSLLWRTFVNACKLCGDM ELGIWASKKLLDLAPNEASSYILVANMYAQGGMPEEAAKVRTTMNDLKLIKETGSSWIEIDNEVHYFIASDKNHPESREI YVNLDLLSDEVCWSSENRNILPLVSDSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 36 | 166 | 131 | 1.1E-15 | ||
| PANTHER | 39 | 162 | 124 | 2.1E-111 | – | |
| ProSiteProfiles | 83 | 113 | 31 | 7.498 | ||
| Pfam | 88 | 113 | 26 | 0.029 | ||
| Pfam | 114 | 160 | 47 | 3.3E-8 | ||
| ProSiteProfiles | 114 | 148 | 35 | 8.605 | ||
| TIGRFAM | 116 | 145 | 30 | 3.2E-4 | ||
| ProSiteProfiles | 149 | 183 | 35 | 5.119 | ||
| PANTHER | 152 | 263 | 112 | 2.1E-111 | – | |
| Gene3D | 167 | 269 | 103 | 4.8E-15 | ||
| ProSiteProfiles | 184 | 214 | 31 | 6.785 | ||
| Pfam | 188 | 209 | 22 | 0.48 | ||
| ProSiteProfiles | 215 | 249 | 35 | 9.306 | ||
| Pfam | 218 | 261 | 44 | 9.2E-8 | ||
| Gene3D | 270 | 368 | 99 | 1.7E-19 | ||
| PANTHER | 271 | 374 | 104 | 2.1E-111 | – | |
| ProSiteProfiles | 285 | 315 | 31 | 8.046 | ||
| TIGRFAM | 290 | 315 | 26 | 4.0E-4 | ||
| Pfam | 290 | 315 | 26 | 1.3E-4 | ||
| ProSiteProfiles | 316 | 350 | 35 | 10.413 | ||
| TIGRFAM | 318 | 345 | 28 | 5.8E-4 | ||
| Pfam | 318 | 348 | 31 | 2.7E-5 | ||
| ProSiteProfiles | 351 | 385 | 35 | 5.492 | ||
| PANTHER | 355 | 466 | 112 | 2.1E-111 | – | |
| Gene3D | 369 | 477 | 109 | 5.7E-10 | ||
| ProSiteProfiles | 386 | 420 | 35 | 6.971 | ||
| PANTHER | 469 | 684 | 216 | 2.1E-111 | – | |
| Gene3D | 478 | 569 | 92 | 2.6E-21 | ||
| ProSiteProfiles | 490 | 517 | 28 | 5.799 | ||
| Pfam | 495 | 517 | 23 | 0.11 | ||
| Pfam | 520 | 566 | 47 | 1.4E-11 | ||
| ProSiteProfiles | 520 | 554 | 35 | 13.318 | ||
| TIGRFAM | 522 | 556 | 35 | 3.9E-9 | ||
| ProSiteProfiles | 555 | 590 | 36 | 6.84 | ||
| Gene3D | 570 | 717 | 148 | 1.7E-8 | ||
| ProSiteProfiles | 657 | 691 | 35 | 6.774 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0007700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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