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LotjaGi1g1v0007900.1

Overview

Field Value
Gene ID LotjaGi1g1v0007900
Transcript ID LotjaGi1g1v0007900.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description RNA-binding protein, putative; TAIR: AT3G07810.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1; TrEMBL-Plants: tr|A0A0B2SI74|A0A0B2SI74_GLYSO DAZ-associated protein 1; Found in the gene: LotjaGi1g1v0007900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:1048397..1054399) extracted from Lotus japonicus Gifu genome v1.2.

TCATCTTCCATTTGCAGAGAGAGTCCCTGCCTATATAATGAGCACCTCACATCTCGCAGCTTCTCTCTCGTCTCGGCGTT CTCCTTCTTCTTCTTCTTCTTCCATTTCCATGTGTTCCTCTCTTTCTCTCATCATCGTAGTTTCGTTTTGTATATAAATT TCTGTAATCGGTTTGGTATCTGAATTTGCATTTGGTAATCTAACACAAGAACAATTCACAAGACACAACAAGGGTGGGGA GAGAGAGAGAGAGGGAGGCATAGCCCAGATAATGAACCTACCCTCTGTTCTTAATCTCATTGTGCCTCCCCTCAGATCTT AAGATTTCCCCATCTGGGTCGTCTTCAATCGGTGGGTTTCTATAGAATCTCGATTGAAGTTTTGATCTTTTTTCAATTGG ATCTCTGATTATTCATGTTTTTTTTGTGGGGTTTTTCCAGGAGTGTGTTTAGTTCTTCCTTGATTCACTGCTTCATGTTG ATCAAGGATCCGATGTTTTCTAACTGAATCCGACAATATCTATATTTACATCGTTAATACAATTCTGTCTCTGTGTTTGT CTTAATTTAAGGTAGTTGTCTGAAATTTTTTTAGGTATCATACTTGGAACTGTTTGTATTTCAACAATTTGATAAATGGT AATGCTATCATGTTTTTTTGTTTTTGTTTTTGTTTTTTCTACTTGGCTAGGATTTTGTTTTTACCTTGTTTTATGTAAGT CTTCTTATTTTCTTCCCAATGCTAAAGGCCTAAAATTGTTTGTTTAAATTTGGATTGGATCCACTAGTTAGGTGCATAGG AGGCTTGGCTTTTCACATTTCTAATGATGCTGCTGCCACTTATAATTGCATTTGTTTAAGCTTTCGAACTTGAAGAATGA AGTGTGTCTCTTTTGCTTGTAGGTAAAATGCAATCTGATAATGGAAAATTATTTATTGGTGGAATATCGTGGGACACAAC TGAAGAGCGACTCCGGGAGTATTTCAGTGCTTATGGTGAGGTTGTGGAAGCAGTGATAATGAAGGATCGGACGACGGGTA GAGCCCGTGGATTTGGTTTTGTTGTTTTCTCTGACCCAGCCGTTGCGGACATAGTCATAAAAGAGAAGCACAACATTGAT GGAAGGATGGTAATTTATTGCCATCTCTTCTCTTAAGTCCAACATTAGCATTCTTACATTATGGTTCTCCTTTTGAATTA TATGACATCAGGGTTCTTATTGCCGAGTTTATGGTTCTCCTTTTGAATTATATGACATCAGGGTTCTTATTGCCGAGGTT CTTTGTGCTGAATTGTAATTTGATTTGCAAAATTTGTTCTATTCTCAATATTTTCTTAGCTAGATGGTAAAATGGACCAA TCATAATTCTCTTATGCATTTGATATTATCTAATCTTATCTGCTTTTCATTCATTATCTTCCTTTCTAGGCATCCGTTGT TAGGATTGATCGGTCTTCATTTCTTTTTCCTCTTTGATTTATAGTCAATGCTGTTGCTTCTATACTAGGTTGAGGCGAAG AAAGCTGTTCCTAGGGATGATCAGACCGTACTGAGTAGAAACAGTGGCAGCATCCACGGTTCTCCTGGTCCAGGTCGCAC AAGAAAGATATTTGTTGGAGGTTTAGCATCAACAGTGACAGAGAGCGATTTCAAGAAGTACTTCGATCAGTTTGGGACTA TAACAGATGTTGTAGTGATGTATGATCACAACACTCAGAGGCCAAGAGGCTTTGGATTTATCACTTATGATTCTGAAGAG GCTGTTGACAAGGTCTTACTGAAGACATTTCATGAATTGAATGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGA GTTATCGCCAGGACCTAGCCGCAGTCCACTTGGTGGATACAGCTATGGTCTGAATAGGGTCAATAGTTTCTTAAATGGCT TCACTCAGGGTTATACTCCAAATACTGTTGGAGGCTATGGACTTCGGATGGATGGTAGATTCAGTCCAGTTGCCGGTGGT CGAAGTGGATTTGCTCCACTTGGATCTGGTTATGGGATGAATCTGAATTTTGAGCCTGGTTTGACTGCTGGATTTGGGGG GAATGCAAATTTCAACAGCAATGTTAGCTATGGTCGGGGATTGAATCCCTACTTTGTTGGAAGTTCCAATAGGTATGGCA GTCCTGTTGGATATGAAAGTAGTAATGGAGGAAACAATTCTTTCTTCAGCTCTGTGACTCGAAATTTGTGGGGGAATGGT GGCCTTAATTATGGAACAAGTTCTGCAAATTCCAATGCATACATTGGATCTGGGAGTGGGAGTGTTGGAGGAAACACATT TGGCAATACTGGAGTCAACTGGGGTTCTTCACCAATATCTGGGCACGGAGGAGGGAACAATGTATCACAGAATAGTGGCA ACCTTGGATATGGAGGTGGTGACAACAGTTACGGTTTGGGGACTGGAGGGTACGGAAGAAGCAGTGGTACCACTCTTGCA CCAACATCTTCATATTCTGCATCAAATGGTGGTGTTGATGGGGCTTTTTCTGACTTTTACAATAACAATTCAGTCTATGG GGACCCCACTTGGCGATCTTCAAATTCTGAGCGAGATGGATCTGGCCCCTTTGGTTATGGACTTGGTGGTGCAGCTTCAG ATGTTTCTGCCAAGAGTTCACCTGGTTATGTTGGTGGTTATACAGTTAACAAAAGACAGCCAAATAGGGGTAAGAGCAAC CTTACTCATCTTAACTTCTCTTTCAGTCTCCTCTGGGAGTCTTGAACAATAGTGGTCTTGAACAATAGTGTGATTTTATT GCATTTGCACAGTATAAGTCTTGAACAATAGTGTTATTTTATTGCATTTGCATAGTATAACTAGTCTATTGCTACAAATC TCAAAAAGGGGTTGGGAAAAAGCTTGATTCTTACAATATTTGTTGGGATTTTTAAGCAATAGTCTAGACTAATGTCAACT TGTAGTTGTTTGGCATTCTGAGTAAATGCCAGGTCCAGATTTTTAATATTTGTTATTTTTTTTCTCTCCTGTAAGTTTGC TATTATTTTGAAAAACTTGTAACGGGTTCTTTGTTCTGTACTTAATCCATTGATTTTGTTGCTTATCTTCTCATTGGCTT GCAAAGATTTAACGGATTTAGATATTATATTTGATCAATTAGGTGAAGTTGTACGTACATATTATTTATGATACTTGTTT CCCAGAATGGTTTCATTGACATCTAATCATGTCCATTATATGATTGCTCTTCTGTTATTCCTATAGGAGGGGTTGACATT GAATAATTATATGTCTTAATTCTCTATACTTCTGCCCTATTTCCTGTATTTCCAACTTCATTTCCTTAATTGCCATATTT TATTGGATAAGTATGCTTCTTGCTGTATGCATGCAACTTTTGAGAGACATGATACCATTCAGATCCTAGAATTCTTGGTA CTTATCCATGGGTGGTGTTCCTCACATTTATATGGTTTTTCTTTCGAATCCTGTATGATACTTAGAGGCTGTGAAAATCG ATACCATAGGCATCAAAAAGTAACTTTCAAATTGAAAGGTGGCTTGAAACATGTTTAAATAACCCCCATAAAAAATCATG TATACTATTCCTTTAGACATGCTTGAATGCTCCAGCATATGGTACTATAGATCATGCTGGAATCATGTATACTATTCCTG GACACATAATTGCCCTACTCCAGGGTAATTTATGCTAGACGTCATTGTTCCACAACCTTACTCTCTTTTAGTTTGAGTCG GTGACGTCAGATTATAGATCGTGTTTATTATGGGTGACAATAGAATAGAAAAGGTCTAGAGTTTGAGGGACGAGAAAATA ACAAAGTGGACAGTGTTAGTTTTGGAAAACAAGAATAAGGAAAGATATAAGCTTCTATAAGTTATTATATTTCAATTTAT GGTCTAGACTCTAGATATCTATAATTTGAAAAAAATTTCCTCTAAAGTGAGTTTTGTTAAGAGAGAAAGTAAAAGTGTAT ACAGATTTGGACTTTTATGGATTAGGATCACGATGTACATCAATTTAAATTAACGCTAATTATAGCCGTACTTGCTCAAT TTACAGACAATCTATTTTGAGTGTGTGGAGTCTTATTATTATAAGTAGAATTTGAATTCTGAAAGAGGCAAGGGTGAACC GAACACATACATTTTTCGCATATGCAAGTATTATAATACATTCAAATTCTCAAACTGAAGTATTACTTCATCATTCATGA ACATAAGCTGTTACTACATAAATACTCAATGCCGAGTAACTTAACAAAATTGAGGGTTGTAATGGGGATGATCCTAATGG CTCATGTCTAATAACATATTTCCCCCTTAATTATGTTTGCCTTCCCTCCATTAAAATCCCTCCCCTCCCCTCCTCTAAAC CAAACACAGTGTAAAACAACAGCTGCTAGTTATGTACTTATAGATTCAAAATCTGAATAGCTGATGGTTTATATGTATGA ATTGCAAGGGGGGGAAAGAAAAGAGTAGCAGTTAGTTTGTACTTTGTAAACATGTCTATATTTCCATTAAATTATAAGAA ATCATCGTTTTCATATTTTGCTTAGAAATTTTATTCACTGTGAGATCCTTTTAATAGTATTGCATTGCCCTCATTTTTCA TGTCTGTGTTTCTCAAAATCATGGGAAGAGAACTCTGACTTTGGAGCAAATCCATAAGAGTTCTGGATAGTGGTCATTGA TGTAAACTTCAGACTATTACTTAGGTGTGCAAGAGAGAGGGAGCTGATTTGAATTTATCTTTGATTTTTTTTCTTTTAGG AAAAACCAGTTACAATACACTAGTACTTTTCTGCTGTATGTTCTGTTGTAGGTCTCTATTTTTCACAGTAACATATAACT TGGATGGAACTTAGGATTGGTGCATTTTACTTGTCATATATGCTTTAAATTATTCATTTTTAGTTGTCTTGTTTGCCAAC ACTGACAAACTTTCTACCTTTGCTTCAGGAATTGCTGCATAGGGAGATCATTTTGATGACACGAACTTGTAGGTGAAGAT AATCCAGTGAAGCAGGTGAATTGTGAATTTTGGCACACCACTGTTGTTACTGTATTTCGGTTTTAAGACGTAAGATGTTT GGTTATCTAGAGCTAACTGAAGTGCTTGTTTTGAGGATTCAGATATAGAGATAGAAGTTACAAGGGAATGTGAAGGCTTG AGTTTTTTGAGTTATTACTATTTAGGTTTTGGGTTTTTTGGGATTTGAGTGAGATGTAAAATCTGATTGCGGGATATAGC GGAAGTGTATCATGCATCACTTGTGAGGAAGCAATATAAAAAAACAAAAAAAAATAGACAGCATTTCTGTTTCTTTTTTC TGGGGTAGAGTTTTGCCTGTAATGTCTTGCAAAGTTGTTGTTCTGCTCAGGAATTGCTTGTTTCTTCATCCATCATTTTG GTTTGCTTTAAGCACATTTGTATCTGAGGATTTTGTTTATTACTAGTGTGAAACATTAAAGGGACACCCTTCTACTTCTA GGGTCCCCGTGAATAAGTTACCAACATATTCTGATTATTTTTTAGGAGGAATATTTTAAGCTACAATTTCAAATTTAATG TGAGAAATGGATCATTTTTCCAAATTCTATGGACTTTTAGTATTTTTTTATACTTTGTTTTCAAAGATATTACAATGGAG TTACAACACGTGGTTGGTACACAGCTGATTCCTCTTGAGTAAAATCTGAGTTTGAGTTTTGTGTATGAAAAAAATATTCT TATTAGGTGAGTCTTCCCACCCAGGTGTGGATATTCTCGGCTCGGAACAAAATTGTCTCCTATGCCGGATACCTGTATTA CACAGGAAAAAAATATTATAATTGACTTGGCCCCATTGGTGTGTTAAACGGCTATGCATGTTTATTTTGGCAAAATAGTA AATGAGTTGAAAGTGAAATAATTTATATTTGGATACATTTATTAAAAAAAGTGGTTTTTGTAGGGTAATGTTGTGAAACT CCA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0007900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAATCTGATAATGGAAAATTATTTATTGGTGGAATATCGTGGGACACAACTGAAGAGCGACTCCGGGAGTATTTCAG TGCTTATGGTGAGGTTGTGGAAGCAGTGATAATGAAGGATCGGACGACGGGTAGAGCCCGTGGATTTGGTTTTGTTGTTT TCTCTGACCCAGCCGTTGCGGACATAGTCATAAAAGAGAAGCACAACATTGATGGAAGGATGGTTGAGGCGAAGAAAGCT GTTCCTAGGGATGATCAGACCGTACTGAGTAGAAACAGTGGCAGCATCCACGGTTCTCCTGGTCCAGGTCGCACAAGAAA GATATTTGTTGGAGGTTTAGCATCAACAGTGACAGAGAGCGATTTCAAGAAGTACTTCGATCAGTTTGGGACTATAACAG ATGTTGTAGTGATGTATGATCACAACACTCAGAGGCCAAGAGGCTTTGGATTTATCACTTATGATTCTGAAGAGGCTGTT GACAAGGTCTTACTGAAGACATTTCATGAATTGAATGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAGTTATC GCCAGGACCTAGCCGCAGTCCACTTGGTGGATACAGCTATGGTCTGAATAGGGTCAATAGTTTCTTAAATGGCTTCACTC AGGGTTATACTCCAAATACTGTTGGAGGCTATGGACTTCGGATGGATGGTAGATTCAGTCCAGTTGCCGGTGGTCGAAGT GGATTTGCTCCACTTGGATCTGGTTATGGGATGAATCTGAATTTTGAGCCTGGTTTGACTGCTGGATTTGGGGGGAATGC AAATTTCAACAGCAATGTTAGCTATGGTCGGGGATTGAATCCCTACTTTGTTGGAAGTTCCAATAGGTATGGCAGTCCTG TTGGATATGAAAGTAGTAATGGAGGAAACAATTCTTTCTTCAGCTCTGTGACTCGAAATTTGTGGGGGAATGGTGGCCTT AATTATGGAACAAGTTCTGCAAATTCCAATGCATACATTGGATCTGGGAGTGGGAGTGTTGGAGGAAACACATTTGGCAA TACTGGAGTCAACTGGGGTTCTTCACCAATATCTGGGCACGGAGGAGGGAACAATGTATCACAGAATAGTGGCAACCTTG GATATGGAGGTGGTGACAACAGTTACGGTTTGGGGACTGGAGGGTACGGAAGAAGCAGTGGTACCACTCTTGCACCAACA TCTTCATATTCTGCATCAAATGGTGGTGTTGATGGGGCTTTTTCTGACTTTTACAATAACAATTCAGTCTATGGGGACCC CACTTGGCGATCTTCAAATTCTGAGCGAGATGGATCTGGCCCCTTTGGTTATGGACTTGGTGGTGCAGCTTCAGATGTTT CTGCCAAGAGTTCACCTGGTTATGTTGGTGGTTATACAGTTAACAAAAGACAGCCAAATAGGGGAATTGCTGCATAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0007900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEKHNIDGRMVEAKKA VPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV DKVLLKTFHELNGKMVEVKRAVPKELSPGPSRSPLGGYSYGLNRVNSFLNGFTQGYTPNTVGGYGLRMDGRFSPVAGGRS GFAPLGSGYGMNLNFEPGLTAGFGGNANFNSNVSYGRGLNPYFVGSSNRYGSPVGYESSNGGNNSFFSSVTRNLWGNGGL NYGTSSANSNAYIGSGSGSVGGNTFGNTGVNWGSSPISGHGGGNNVSQNSGNLGYGGGDNSYGLGTGGYGRSSGTTLAPT SSYSASNGGVDGAFSDFYNNNSVYGDPTWRSSNSERDGSGPFGYGLGGAASDVSAKSSPGYVGGYTVNKRQPNRGIAA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.30.70.330
1 91 91 4.9E-26
IPR012677
SUPERFAMILY
SSF54928
3 104 102 4.16E-27
IPR035979
ProSiteProfiles
PS50102
6 82 77 17.66
IPR000504
SMART
SM00360
7 78 72 2.2E-24
IPR000504
CDD
cd12325
8 78 71 2.23623E-38 –
Pfam
PF00076
8 69 62 1.1E-15
IPR000504
PANTHER
PTHR15241
13 293 281 8.0E-161 –
PANTHER
PTHR15241:SF146
13 293 281 8.0E-161 –
MobiDBLite
mobidb-lite
82 101 20 - –
Gene3D
G3DSA:3.30.70.330
103 181 79 9.6E-26
IPR012677
CDD
cd12327
104 183 80 1.6301E-47
IPR034131
SUPERFAMILY
SSF54928
105 193 89 2.42E-26
IPR035979
ProSiteProfiles
PS50102
106 183 78 17.677
IPR000504
SMART
SM00360
107 179 73 8.6E-24
IPR000504
Pfam
PF00076
108 165 58 9.5E-16
IPR000504
MobiDBLite
mobidb-lite
426 478 53 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0007900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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