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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0008400 |
| Transcript ID | LotjaGi1g1v0008400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GRAS family transcription factor; TAIR: AT5G48150.1 GRAS family transcription factor; Swiss-Prot: sp|Q9LDL7|PAT1_ARATH Scarecrow-like transcription factor PAT1; TrEMBL-Plants: tr|V7BDE6|V7BDE6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0008400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1097893..1103440) extracted from Lotus japonicus Gifu genome v1.2.
CTGAGCATCAGATCAACATTAAACACTTGCCAATGGTTTTTGTGTAGTTTCTATAATTATGTAAGGGCTGTTTTTCTTCT TCATTATTCTATATGCCACTGCTAGTTTTTCTTCATTGGAATAGCTTTGTCTCTCTTCCCTCTACTTTATCTCATGTACT CACTCCTATGCTCTTAAATTCTACTCCACTGTGTCTTATTCAGCTTTAAAGGAGTTTCCATCCTCAAAACAAAGTAAGAA TCTGGTTTAACTCATGGCCTCAAACTGAAAGCCATGGATGACTTTATATTTTTCCTTCATAAATTGCTTTATTTTTGTTC TTCCATAGATTTACAAGGGTTTCTTTCTCCAAATGGGTTTGTGATGTAAAGTGTGTTAAGCTCATCCTCCTTATCTGTGG ATTTCTTGAGTTTGGTTTTTAGCATTTCTGTTTGTGATGGAAATTGTTTTACCTGAAATGTCAGTCTCCTTTGTTTTAAT CTTTAGTGGCTTCTTAGACAATTCATGCAATGAGGTGAGATATTTGATTTCCTGTTTCTAGTCATGGGGTGATATGTATT TTTCTGTGAACCCATCTGTTTATTATAATTTTGTTCTGACTTCTGATGTATATGTCAGTACTGTTTAAGGGGTGATTTGA TTAAACCTTGTCATATATAGGTGATATTGGCTAAGTGCATGTTTGGAACCCTTCTACAATTGATTCTGAAGTCATAATCA ATTTTGGAATTGATTCTGAAGTCAGAATCAATTTTGGTGAGAAGCTTATGGGGTTTAGAATTGATTCTGGTGAAAGAGAA GTTGATCCAAACATGATATAAGAGTGTCTGGGTAACTTCAGAAAAAGTACTTTCCATTTGCTGATGCTACTTTTGTGGTA TGTGCATCTGTTCTTACTGACATTCAAAGTTTTCTCCCTCTCTGTTAATTTTCAGATTTTTTTAAAATAACAAATTTCAT TAGATTTTGTGAAAGATTTCGTAGAGGATTTTTCACTATACCAATGTATGTTCTTCTATTGTATAAAGTACTTAATTTTA TTCAGATGAAATCTAATTCAATCCTATATACAGGGCCATCTACATTTTTTGTGTGTCTTGTTCATGTTCTGATAATTCCC TATTCTCTCTCTCTTTGTTTAATTCTGAAAATTATGAAATATTTTTCTTTTCTTTATTGGTCAATGAAAATCATAATTCT TTGAAATTGGTTATTTATGCAGTTTCTTGGTCATTTACTATTTTTTGGTAAAAGAAAACAGATAGAAGAAATGAAATATT TGACTTGGTATGAGAGTCCATGTTGTTGATAATACACGGCAGAAGAAGAAAAAGTAGGCTAATTGTAACAGTGCACTGTT CTACAAGAGTGCTTAGTTTCTTTAGGACCTGAAAACAAATATTCTATTTCTTTCTATATATTATATGAATGTTAACATTG ATGCTGTGCTTCTTCCATGCAGACAGAAGATTGTCTCAAATCTTTGGTTTTCCATCACAGAAGAATGAACTTGTTGTAGC AATTAAAGACTAGAACTACGTGTCTACTTTGAAAGCCTATCCAGGGATATCACTTTTGTTGTCATGAGTACCACTTAGCA ACTGTGTCTAAACAACTATTGGTGATAGTTCACCTTCTTAATACAATCTCCTGGAAGAGACCTTGGAAGCATTAAAGTTG AGAAGTGATTCATTCTACAATGCAGGCATCAGAGCAACATAGAAGTTCAAGCATGTACCATCAACAGTTGCAACAGATTG AAGCCTACAACTTGCCGCAGTATCGAACCCTGAATCATCAGCTATACTACAATGATGGAGGCCAATTCTCCACTCCAAGT TCTTCTGAACTTTACTGCACATTGGAGTCATCATCTGCAACTGGAAGCTTCACTGTTTACAACTCTCCTTCAACTGTTAG TTTCTCACCTAATGGTAGCCCAATATCACAGCAAGATTCTCAGTCATATTCATATCCACCTGAACAGTATCATTCCCCTG ACAACAACTATGGCTCTCCGATGAGTGGATCTTGCATAACCGATGATGTAAGTAGCTTCAAGCACAAGCTGAGAGAGTTA GAAAGTGTAATGCTTGGCCCTGACTCTGATAACATTGATAGTTATGACAGTGCTATTAGCAATGCAACCAACTTTGTTTC ACTTGAGATGGACAGTTGGAGACAAACAATGGTAGCAATTTCTACTAAAAACCTGAAGCACATCCTTATTGCATGTGCCA AAGCAATTGCAGACAACGATTTGCTAATGGGGCAATGGCTTATGGATGAATTGCGGCAGATGGTGTCAGTTTCTGGCGAA CCGGTTCAGAGGTTGGGAGCATACATGCTAGAAGGACTTGTTGCGCGATTGTCCGCATCCGGGAGTTCAATCTACAAAGC TTTGAGGTGCAAAGAACCAGAAAGTTCTGAGCTTCTCTCCTACATGCACATACTTTATGAGGTTTGCCCCTACTTCAAGT TTGGATACATGTCTGCCAATGGAGCCATTGCAGAAGCGATGAAAGATGAAGATAGAGTCCATATAATTGATTTCCAAATT GCACAAGGAAGCCAGTGGATCACTTTGATTCAGGCTTTTGCAGCTAGGCCTGGGGGACCACCCCACATCCGAATTACAGG TATTCAAGGACGGACCTAGGTTGATAGGAAATGGGGCAGATTGCCTCCTCCAATTAGTCATTGTTGATTTTTTTGGGCTT GTTTGATTCTCTTCTCAGTTTTCTGAATTTAAAAACTATTTTCAGAAGAAAATAAAGGAAAAACAGTTTGAATTAGATGT TTTGCAAAGTTTAAAGAGAGAGATGTTTTGAGTTTTAAAAACTGAAAATAAGAACTGTTTTGAAAAACTTTTTGTATCAA ACAAGTTTTCCTGTTTTTAAAAACTGATTCACAAAATAATAATCAAACAGACCCTTTACTTTTATGTGTTAAATTTTCGC GGCTTACCAATATTTTCTGGTTCCGTCCCTTCAGGTATTGATGATTCAACATCAGCTTATGCCCGCGGAGGGGGACTACA CATTGTGGGAAAGAGGTTATCAAAGCTTGCTCAGCATTTTAAGGTGCCATTTGAATTTCATGCTGCAGCTATCTCTGGTT GTGATGTTCAACTGCATAACCTTGGAGTTAGACAAGGCGAAGCTCTTGCTGTAAATTTTGCATTCATGCTGCATCACATG CCGGACGAAAGTGTCAGCACTCAGAATCATAGGGACAGGCTGTTGAGGTTGGTTAAGAGCCTATCACCAAAGGTGGTGAC ACTTGTTGAGCAAGAATCCAACACAAACACTGCTGCGTTCTTTCCACGTTTTCTTGAAACTCTGGAGTATTACACAGCAA TGTTTGAATCAATAGATGTTACTCTCCCTAGAGAGCATAAAGAGAGAATCAATGTGGAGCAGCATTGCTTGGCAAGGGAC TTGGTTAACATCATAGCTTGTGAAGGGGTTGAGAGAGTGGAGCGACACGAGGTACTTGGGAAGTGGAGGTCAAGATTTGC AATGGCTGGTTTCACTCCTTACCCATTGAGTTCATTGGTGAATGGCACAATAAAGAAACTGCTTGAGAACTACAGTGATA GATATAGACTTGTAGAGAGAGATGGTGCTCTATACCTGGGTTGGATGAATAGAGATTTGGTTGCTTCATGTGCATGGAAA TGAGAACTGAGCATTATGTGACTCCTCAAAGTTTGAGGTGGGATCAAGATGAACCTGTCCTTGTTCTTATTCGGTTTAGT TACTTAGGAAGAGTTAATGAGAAAAGCCACATCACATCCAATCTAATTGTCCATTTTCTCTGTTTCAAGAATTTCGGTAT GAAATGTAGCTAGCATTTTTCTTGTATCAGTAATATTGATCTTTCTTTTCACAGTCTTTCTGGACCCTGAATTAAAAGAT GGTTACATATAACAGCTTGACATGGTGGCTAGGGAAAGTGATTTCTTGGAGTAATAAGAGTGAGAATGACTTTTCACAGC TATGACTACACATTATGTTATTGCTAAAAAAACACACTTCCTGGAAGATATTAATAAACTGAGGCTGTGAGTTTTGGTGC ATGAAGAGAGTTTTTCCTCCTGAAGGAAAAGTTTCTCCCAAGCTGACTAGGTTGAAAATGACTTGTAAAGTTGGACTTGA AAAATTAAGGCTTAAATAAGTTTTTGGTCCCTAACCTTTACTAAATGATTGGTTTTCGTCCCTCGCCGGAGCAAAGGTGG GTTTTAATCCCTAACCTTTGCCAAAATGTTTGGTTTTCATCCCTCCGGAGCACTGGGTCAACGCCGGAGCTCCGGTGGCC CATGTGGCATTGCCACATGGGATTAATGAGGCCAGGTGTTTTTTTATTTAAAAAAAAGAGAAAATTATTCTCTTCACCAT ATTTTCTGTTGTTTGCGTTAATTGGGGTGCTCTAATTAAACTCTTCAATTGCAATAAACTAATATTTTCCCTTCTTCAAC AGCCTGCATCCACTCAAAGTTTCCAGATCTTTCACAATCTCCAAATTATGTTTAATCTCAACAATTCTTTTCATCTTTCA AAAAGCAATTTAAAATAGTATTTTCACTCACCCAAAAACGTGATCCTCCACACCACCCCTCCCAATCCCAACACACCATC ATCAACAATCAAACCCTGTGCTACAGCCCAAATCAGTACTCGATCTTTGTCACATTCCCAGCCCTGAGAAGAAAACCACT GCACCAAATTGCCAGAACCAGACGAACAACAACATAATATAGAAGAACAATTGGAAGATCATGTGTTGCCTAATTTGGAC TGGTAGGATTCCATAATGAAGGATTGATCTCAGATGCCGGTGGAAATATGGATCTGAGATGCATGTGAAAACCCAGATCC AGGGGTCGTGGTGGCTTGGTGCGGTGAGGGTTCGTCAAGCGCGCACCGCCGCCACCATCATCTTCATGGAGGCCATCCAC CGTTGTGTTTCATATCTGGGTTGGGGTTTGAGGGATCTGAATTGGATTTGGGTTTCAATGACTGCCTCCCTCTACTCTCG TTATCTCCTCCTCCCTATCCCTTCAGTCGCACCCTTTGTATAACCATCGATGGCTTCATAGTGGCTCCGGCCATGGTGGT AAGTGTTTGAATAAAAGGTTGATTTGGGGGAATGGGTTGTTAAAAGTTGCGATTTTGAGGAAGAATCAGTGGTGAAGATG GGGTGAAGGTGGTGTTGGGGTTGGGGTTGGGGTTGGGATGGAGTGTCTGTAAGCAATTTCTGCGCTTGGGATGAGGTAAA GGAGAAGAAGATGAGGAAGGATGATGGTGTTGATGATGATGAAGAAGAAATCTGGGTGTGGGTTTTAATTAATTAAAAAA GAGGTTAATTAGTGCATTGTGGTGAGGGATTAGTTTAGGTTAATTGGGGTTTTTAATTAGTGAGTTAAGAGTTTTTAATT ACTGAGTTAATTTTCTATTTTTCTTAAAAAAAATTAATAATAATAACAGCTGGCCTCATTAATCCCATGTGGCAATGCCA CATGGGCCACCGGAGCTCCGGCGTTGAC
CDS sequence (LotjaGi1g1v0008400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGGCATCAGAGCAACATAGAAGTTCAAGCATGTACCATCAACAGTTGCAACAGATTGAAGCCTACAACTTGCCGCA GTATCGAACCCTGAATCATCAGCTATACTACAATGATGGAGGCCAATTCTCCACTCCAAGTTCTTCTGAACTTTACTGCA CATTGGAGTCATCATCTGCAACTGGAAGCTTCACTGTTTACAACTCTCCTTCAACTGTTAGTTTCTCACCTAATGGTAGC CCAATATCACAGCAAGATTCTCAGTCATATTCATATCCACCTGAACAGTATCATTCCCCTGACAACAACTATGGCTCTCC GATGAGTGGATCTTGCATAACCGATGATGTAAGTAGCTTCAAGCACAAGCTGAGAGAGTTAGAAAGTGTAATGCTTGGCC CTGACTCTGATAACATTGATAGTTATGACAGTGCTATTAGCAATGCAACCAACTTTGTTTCACTTGAGATGGACAGTTGG AGACAAACAATGGTAGCAATTTCTACTAAAAACCTGAAGCACATCCTTATTGCATGTGCCAAAGCAATTGCAGACAACGA TTTGCTAATGGGGCAATGGCTTATGGATGAATTGCGGCAGATGGTGTCAGTTTCTGGCGAACCGGTTCAGAGGTTGGGAG CATACATGCTAGAAGGACTTGTTGCGCGATTGTCCGCATCCGGGAGTTCAATCTACAAAGCTTTGAGGTGCAAAGAACCA GAAAGTTCTGAGCTTCTCTCCTACATGCACATACTTTATGAGGTTTGCCCCTACTTCAAGTTTGGATACATGTCTGCCAA TGGAGCCATTGCAGAAGCGATGAAAGATGAAGATAGAGTCCATATAATTGATTTCCAAATTGCACAAGGAAGCCAGTGGA TCACTTTGATTCAGGCTTTTGCAGCTAGGCCTGGGGGACCACCCCACATCCGAATTACAGGTATTGATGATTCAACATCA GCTTATGCCCGCGGAGGGGGACTACACATTGTGGGAAAGAGGTTATCAAAGCTTGCTCAGCATTTTAAGGTGCCATTTGA ATTTCATGCTGCAGCTATCTCTGGTTGTGATGTTCAACTGCATAACCTTGGAGTTAGACAAGGCGAAGCTCTTGCTGTAA ATTTTGCATTCATGCTGCATCACATGCCGGACGAAAGTGTCAGCACTCAGAATCATAGGGACAGGCTGTTGAGGTTGGTT AAGAGCCTATCACCAAAGGTGGTGACACTTGTTGAGCAAGAATCCAACACAAACACTGCTGCGTTCTTTCCACGTTTTCT TGAAACTCTGGAGTATTACACAGCAATGTTTGAATCAATAGATGTTACTCTCCCTAGAGAGCATAAAGAGAGAATCAATG TGGAGCAGCATTGCTTGGCAAGGGACTTGGTTAACATCATAGCTTGTGAAGGGGTTGAGAGAGTGGAGCGACACGAGGTA CTTGGGAAGTGGAGGTCAAGATTTGCAATGGCTGGTTTCACTCCTTACCCATTGAGTTCATTGGTGAATGGCACAATAAA GAAACTGCTTGAGAACTACAGTGATAGATATAGACTTGTAGAGAGAGATGGTGCTCTATACCTGGGTTGGATGAATAGAG ATTTGGTTGCTTCATGTGCATGGAAATGA
Protein sequence (LotjaGi1g1v0008400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQASEQHRSSSMYHQQLQQIEAYNLPQYRTLNHQLYYNDGGQFSTPSSSELYCTLESSSATGSFTVYNSPSTVSFSPNGS PISQQDSQSYSYPPEQYHSPDNNYGSPMSGSCITDDVSSFKHKLRELESVMLGPDSDNIDSYDSAISNATNFVSLEMDSW RQTMVAISTKNLKHILIACAKAIADNDLLMGQWLMDELRQMVSVSGEPVQRLGAYMLEGLVARLSASGSSIYKALRCKEP ESSELLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIAQGSQWITLIQAFAARPGGPPHIRITGIDDSTS AYARGGGLHIVGKRLSKLAQHFKVPFEFHAAAISGCDVQLHNLGVRQGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLV KSLSPKVVTLVEQESNTNTAAFFPRFLETLEYYTAMFESIDVTLPREHKERINVEQHCLARDLVNIIACEGVERVERHEV LGKWRSRFAMAGFTPYPLSSLVNGTIKKLLENYSDRYRLVERDGALYLGWMNRDLVASCAWK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 17 | 542 | 526 | 1.3E-290 | – | |
| PANTHER | 17 | 542 | 526 | 1.3E-290 | – | |
| MobiDBLite | 75 | 108 | 34 | - | – | |
| ProSiteProfiles | 163 | 542 | 380 | 101.198 | ||
| Pfam | 172 | 542 | 371 | 1.7E-136 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0008400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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