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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0008900 |
| Transcript ID | LotjaGi1g1v0008900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Potyviral VPg interacting protein 2; TAIR: AT5G48160.1 potyvirus VPg interacting protein (DUF1423); Swiss-Prot: sp|Q84N37|PVIP_PEA OBERON-like protein; TrEMBL-Plants: tr|A0A151S028|A0A151S028_CAJCA Protein VERNALIZATION INSENSITIVE 3; Found in the gene: LotjaGi1g1v0008900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1156880..1159173) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTCCCTCCGCGGCAGCAATCACGGGTTGGAGGACTACCGACGTCTCTGTCTCTGGTTTCTTCAGATCCTCCTCGCCT TTCCCCGGAGGAACCTAGGTCAAACTTTGACGCCCTCCGTGAATCTCCTACTGAAAGTGCCAATTCTCGAGAAACCTTCC CGACTGCAGATGCAATTGCTGCAAAGAAGATGGAGAATGGAAAAGCTGAGATCAATTTCCCTGATCAGTCGATTATTCGT CGTGTTTCCAGCGCAGACAAGATTAGTCTTCAGGACATTGCAAGAGAAAGAGTTGATGTGATCTGTGAAAAAATGCATCG TCTACCTGAAGAGTTTCTGGAAGAGCTGAAGAGTGGACTTCGAGTGATCCTTGAGGGAGGGAATGGATCGCAGCATAGAG AGGAGTTTTTCGTTTTGCAGAAGCTTGTTCAGAGTAGAGCTGATTTAACAGCCAAGACTTTGATAAGAGCGCATCGTGTG CAGCTTGAAATCCTTGTTGCCATAAACACTGGAATTCAGGGATTCTTACATCCTAGCATCAGTTTATCTCAGACTTCATT GATTGAAATATTTGTGTATAAGAGATGCAGAAACATAGCTTGCCAAAACCAGCTTCCGGCTGATGATTGTACCTGTGAAA CATGCACCAACAACAATGGCTTCTGCAACCTCTGCATGTGTGTTATCTGCAGCAAGTTTGACTTTGAAGTAAATACCTGC CGCTGGATTGGATGTGACTTGTGTTCTCATTGGACTCACACAGATTGTGCCATTCGTGAGCAACTTATTTGCATGGGCCC TACTGTAAAGAGTGGAGCAGGGCCAAGTGAAATGGTTTTCAGGTGTCAAGCATGCAATAGGACTTCAGAACTGTTGGGTT GGGTTAAAGATGTCTTCCAGCACTGTGCTCCATCATGGGATGGGGAGGCCTTAATGAGGGAACTTGATTTTGTAAGTAGG ATCTTTCATGGTAGTAAAGACCCTCGAGGGAGGAAACTCTTTTGGAACTGTGATGATCTCAAGGAAAAACTGAAGAGTGG AAAATTGGAATCTAAGGCAGCGTGTAGGGCAATATTGGTGGTCTTCCAAGGTACAAATTTTCTAGTTTACTTGCAAATTG ATGTTTTCCAATTTACTTGTGTAGTATTAGACTATTAGTATATATAGAGTTTCATATCCTCTGGTACTAAAATTTCATAT GATCTGGTAATGTTAAAATTTTGCGTCTTCCTCTTCATAAGTATTTACTAGTTTTGTTTTTATAGGGTTTCACCTATTTA ATACATATGAAGAGAGAGATGAACACAATTTTAACATGACCAGGTCCTGTCAAATTTCAACATGAGAGAACCCATTCCCC TTTGCATTTTCTTTTGTCTCGTTCACTATTTCCATATTTGATTATGCCTAAAAAGATGGAATTTCATAAAAACCAAGTAT AGAAAGATGAAAAGAAAAAGCTCTTACACTATATTTTGAAATCATTGCCAAACTGTCTATTTTCTCTTCATTAGAACCTG ATTTCAAACAGATGTTGGGATAAAATGATTGGTTTGCAATCATTAAAAATGTTGTATAATCAATAAAATTAATCCTATTG TTGCAACTGGATAGTGGCTGTTACTTTTAACTTTTACCCTTTCTCCATGTTCTAACCAATGCTTTTCCTATGTGAAGAGC TTGAGGTGGACTCTCCTAAGACCCTGGAAAATGCAGAAGGTGGAAGGCTGATTGCTCCACAGGAGTCATGCAATAGAATT GCTGAAGTGGTCCAGGAGGCTATAAGAAAGATGGAAATGGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGGTT GGCTCTTGAGGCTTGTGATCGTGAATTAGCCGACAAGGCCAGAGAAGCCGGAGAACTCAAGACGGAGAGGCAAAAAAAGA AGTTACAGATTGAAGAACTGGAGAGAATTGTGAGGCTGAAAAATGCCGAGGCTGATATGTTCCAATTGAAAGCTAATGAG GCTAAACGAGAGGCGGAGAGGCTCCAGAGGATTGCTCTTGCCAAGTCTGATAAATCAGAGGAAGAATATACAAGCAACTA TTTGAAACAGAAATTAAGCGAGGCTGAGGCTGAGAAGCAATATCTGTATGAGAAGATCAAATTGCAGGAGAGTTCTCGCT TATCACAGAGCAGTAGTGGTGGTGACCCCTCTTCAATGTTTATGTATTCCAAAATCCATGATCTTCTCTATAGTGGTCCT CCCAAGGCAGACAGTCAATCTACTGACGGCCACCCTTTCCGCACAAACCAATGA
CDS sequence (LotjaGi1g1v0008900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCCCTCCGCGGCAGCAATCACGGGTTGGAGGACTACCGACGTCTCTGTCTCTGGTTTCTTCAGATCCTCCTCGCCT TTCCCCGGAGGAACCTAGGTCAAACTTTGACGCCCTCCGTGAATCTCCTACTGAAAGTGCCAATTCTCGAGAAACCTTCC CGACTGCAGATGCAATTGCTGCAAAGAAGATGGAGAATGGAAAAGCTGAGATCAATTTCCCTGATCAGTCGATTATTCGT CGTGTTTCCAGCGCAGACAAGATTAGTCTTCAGGACATTGCAAGAGAAAGAGTTGATGTGATCTGTGAAAAAATGCATCG TCTACCTGAAGAGTTTCTGGAAGAGCTGAAGAGTGGACTTCGAGTGATCCTTGAGGGAGGGAATGGATCGCAGCATAGAG AGGAGTTTTTCGTTTTGCAGAAGCTTGTTCAGAGTAGAGCTGATTTAACAGCCAAGACTTTGATAAGAGCGCATCGTGTG CAGCTTGAAATCCTTGTTGCCATAAACACTGGAATTCAGGGATTCTTACATCCTAGCATCAGTTTATCTCAGACTTCATT GATTGAAATATTTGTGTATAAGAGATGCAGAAACATAGCTTGCCAAAACCAGCTTCCGGCTGATGATTGTACCTGTGAAA CATGCACCAACAACAATGGCTTCTGCAACCTCTGCATGTGTGTTATCTGCAGCAAGTTTGACTTTGAAGTAAATACCTGC CGCTGGATTGGATGTGACTTGTGTTCTCATTGGACTCACACAGATTGTGCCATTCGTGAGCAACTTATTTGCATGGGCCC TACTGTAAAGAGTGGAGCAGGGCCAAGTGAAATGGTTTTCAGGTGTCAAGCATGCAATAGGACTTCAGAACTGTTGGGTT GGGTTAAAGATGTCTTCCAGCACTGTGCTCCATCATGGGATGGGGAGGCCTTAATGAGGGAACTTGATTTTGTAAGTAGG ATCTTTCATGGTAGTAAAGACCCTCGAGGGAGGAAACTCTTTTGGAACTGTGATGATCTCAAGGAAAAACTGAAGAGTGG AAAATTGGAATCTAAGGCAGCGTGTAGGGCAATATTGGTGGTCTTCCAAGAGCTTGAGGTGGACTCTCCTAAGACCCTGG AAAATGCAGAAGGTGGAAGGCTGATTGCTCCACAGGAGTCATGCAATAGAATTGCTGAAGTGGTCCAGGAGGCTATAAGA AAGATGGAAATGGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGGTTGGCTCTTGAGGCTTGTGATCGTGAATT AGCCGACAAGGCCAGAGAAGCCGGAGAACTCAAGACGGAGAGGCAAAAAAAGAAGTTACAGATTGAAGAACTGGAGAGAA TTGTGAGGCTGAAAAATGCCGAGGCTGATATGTTCCAATTGAAAGCTAATGAGGCTAAACGAGAGGCGGAGAGGCTCCAG AGGATTGCTCTTGCCAAGTCTGATAAATCAGAGGAAGAATATACAAGCAACTATTTGAAACAGAAATTAAGCGAGGCTGA GGCTGAGAAGCAATATCTGTATGAGAAGATCAAATTGCAGGAGAGTTCTCGCTTATCACAGAGCAGTAGTGGTGGTGACC CCTCTTCAATGTTTATGTATTCCAAAATCCATGATCTTCTCTATAGTGGTCCTCCCAAGGCAGACAGTCAATCTACTGAC GGCCACCCTTTCCGCACAAACCAATGA
Protein sequence (LotjaGi1g1v0008900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLPPRQQSRVGGLPTSLSLVSSDPPRLSPEEPRSNFDALRESPTESANSRETFPTADAIAAKKMENGKAEINFPDQSIIR RVSSADKISLQDIARERVDVICEKMHRLPEEFLEELKSGLRVILEGGNGSQHREEFFVLQKLVQSRADLTAKTLIRAHRV QLEILVAINTGIQGFLHPSISLSQTSLIEIFVYKRCRNIACQNQLPADDCTCETCTNNNGFCNLCMCVICSKFDFEVNTC RWIGCDLCSHWTHTDCAIREQLICMGPTVKSGAGPSEMVFRCQACNRTSELLGWVKDVFQHCAPSWDGEALMRELDFVSR IFHGSKDPRGRKLFWNCDDLKEKLKSGKLESKAACRAILVVFQELEVDSPKTLENAEGGRLIAPQESCNRIAEVVQEAIR KMEMVADEKMRMFKKARLALEACDRELADKAREAGELKTERQKKKLQIEELERIVRLKNAEADMFQLKANEAKREAERLQ RIALAKSDKSEEEYTSNYLKQKLSEAEAEKQYLYEKIKLQESSRLSQSSSGGDPSSMFMYSKIHDLLYSGPPKADSQSTD GHPFRTNQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 551 | 551 | 1.9E-246 | ||
| PANTHER | 1 | 556 | 556 | 0.0 | – | |
| MobiDBLite | 1 | 53 | 53 | - | – | |
| PANTHER | 1 | 556 | 556 | 0.0 | ||
| MobiDBLite | 9 | 23 | 15 | - | – | |
| MobiDBLite | 39 | 53 | 15 | - | – | |
| PRINTS | 104 | 126 | 23 | 2.7E-81 | ||
| PRINTS | 146 | 161 | 16 | 2.7E-81 | ||
| PRINTS | 161 | 176 | 16 | 2.7E-81 | ||
| PRINTS | 187 | 208 | 22 | 2.7E-81 | ||
| Pfam | 196 | 319 | 124 | 3.2E-40 | ||
| SMART | 226 | 286 | 61 | 0.0034 | ||
| CDD | 226 | 285 | 60 | 4.43287E-29 | – | |
| PRINTS | 233 | 253 | 21 | 2.7E-81 | ||
| PRINTS | 306 | 325 | 20 | 2.7E-81 | ||
| Pfam | 414 | 547 | 134 | 5.3E-50 | ||
| Coils | 420 | 489 | 70 | - | – | |
| PRINTS | 449 | 469 | 21 | 2.7E-81 | ||
| PRINTS | 488 | 510 | 23 | 2.7E-81 | ||
| MobiDBLite | 548 | 568 | 21 | - | – | |
| MobiDBLite | 552 | 568 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0008900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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