Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR032881
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 33 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.673s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0001909.1
n.a. PREDICTED: OBERON-like protein-like [Glycine max] gi|356547843|ref|XP_003542314.1| chr0 569294 573046 -
2 domain predictions
 –
Lj0g3v0089799.1
n.a. PREDICTED: OBERON-like protein-like [Glycine max] gi|356547843|ref|XP_003542314.1| chr0 36907543 36909917 +
2 domain predictions
 –
Lj0g3v0089809.1
n.a. n.a. chr0 36907543 36910023 -
2 domain predictions
 –
Lj0g3v0176879.1
n.a. PREDICTED: protein OBERON 3-like [Glycine max] gi|356577055|ref|XP_003556645.1| chr0 85523484 85526598 -
2 domain predictions
 –
Lj0g3v0294479.1
n.a. PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Glycine max] gi|356551773|ref|XP_003544248.1| chr0 153043570 153049930 +
2 domain predictions
 –
Lj1g3v0084960.1
n.a. Calmodulin protein kinase [Medicago truncatula] gi|357480891|ref|XP_003610731.1| chr1 796342 799421 +
2 domain predictions
 –
Lj1g3v0084960.2
n.a. Calmodulin protein kinase [Medicago truncatula] gi|357480891|ref|XP_003610731.1| chr1 796342 799421 +
2 domain predictions
 –
Lj1g3v0095210.1
n.a. Uncharacterized protein TCM_020641 [Theobroma cacao] gi|508713810|gb|EOY05707.1| chr1 830103 834208 +
2 domain predictions
 –
Lj2g3v3337760.1
n.a. PREDICTED: OBERON-like protein-like [Glycine max] gi|356552124|ref|XP_003544420.1| chr2 42430419 42433448 +
2 domain predictions
 –
Lj3g3v3689940.1
n.a. PREDICTED: protein OBERON 4-like [Glycine max] gi|356544293|ref|XP_003540588.1| chr3 44807564 44812584 -
2 domain predictions
 –
Lj4g3v2120360.1
n.a. PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Glycine max] gi|356562279|ref|XP_003549399.1| chr4 28973071 28978104 +
2 domain predictions
 –
Lj4g3v2409500.1
n.a. PREDICTED: protein OBERON 3-like [Glycine max] gi|356512285|ref|XP_003524851.1| chr4 33458018 33461944 -
2 domain predictions
 –
Lj4g3v3093980.1
n.a. PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Glycine max] gi|356527799|ref|XP_003532494.1| chr4 41050117 41056668 +
2 domain predictions
 –
Lj5g3v2045980.1
n.a. Uncharacterized protein TCM_020641 [Theobroma cacao] gi|508713810|gb|EOY05707.1| chr5 29413218 29417323 -
2 domain predictions
 –
LotjaGi1g1v0008900.1
n.a. Potyviral VPg interacting protein 2; TAIR: AT5G48160.1 potyvirus VPg interacting protein (DUF1423); Swiss-Prot: sp|Q84N37|PVIP_PEA OBERON-like protein; TrEMBL-Plants: tr|A0A151S028|A0A151S028_CAJCA Protein VERNALIZATION INSENSITIVE 3; Found in the gene: LotjaGi1g1v0008900 LjG1.1_chr1 1156339 1159987 -
2 domain predictions
 –
LotjaGi1g1v0008900.2
n.a. Potyviral VPg interacting protein 2; TAIR: AT5G48160.1 potyvirus VPg interacting protein (DUF1423); Swiss-Prot: sp|Q84N37|PVIP_PEA OBERON-like protein; TrEMBL-Plants: tr|A0A151S028|A0A151S028_CAJCA Protein VERNALIZATION INSENSITIVE 3; Found in the gene: LotjaGi1g1v0008900 LjG1.1_chr1 1156880 1159173 -
2 domain predictions
 –
LotjaGi1g1v0136700.1
n.a. Protein VERNALIZATION INSENSITIVE 3; TAIR: AT4G30200.2 vernalization5/VIN3-like protein; Swiss-Prot: sp|Q9SUM4|VIL2_ARATH VIN3-like protein 2; TrEMBL-Plants: tr|I1MB08|I1MB08_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0136700 LjG1.1_chr1 22256895 22263873 -
2 domain predictions
 –
LotjaGi2g1v0004800.1
n.a. Protein OBERON 3; TAIR: AT1G14740.1 class I heat shock protein, putative (DUF1423); Swiss-Prot: sp|Q94B71|OBE3_ARATH Protein OBERON 3; TrEMBL-Plants: tr|I1K3D1|I1K3D1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0004800 LjG1.1_chr2 1766804 1770525 +
2 domain predictions
 –
LotjaGi2g1v0212600.1
n.a. Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.1 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|A0A0B2QHH8|A0A0B2QHH8_GLYSO Protein VERNALIZATION INSENSITIVE 3; Found in the gene: LotjaGi2g1v0212600 LjG1.1_chr2 66100435 66110334 -
2 domain predictions
 –
LotjaGi2g1v0212600.2
n.a. Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.1 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|A0A0B2QHH8|A0A0B2QHH8_GLYSO Protein VERNALIZATION INSENSITIVE 3; Found in the gene: LotjaGi2g1v0212600 LjG1.1_chr2 66100900 66109952 -
2 domain predictions
 –
LotjaGi2g1v0212600.3
n.a. Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.1 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|A0A0B2QHH8|A0A0B2QHH8_GLYSO Protein VERNALIZATION INSENSITIVE 3; Found in the gene: LotjaGi2g1v0212600 LjG1.1_chr2 66100946 66104749 -
2 domain predictions
 –
LotjaGi2g1v0212600.4
n.a. Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.1 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|A0A0B2QHH8|A0A0B2QHH8_GLYSO Protein VERNALIZATION INSENSITIVE 3; Found in the gene: LotjaGi2g1v0212600 LjG1.1_chr2 66101263 66104022 -
2 domain predictions
 –
LotjaGi2g1v0455000.1
n.a. Protein OBERON 1; TAIR: AT1G05410.1 CDPK adapter, putative (DUF1423); Swiss-Prot: sp|Q9S736|OBE1_ARATH Protein OBERON 1; TrEMBL-Plants: tr|A0A1J7H3L6|A0A1J7H3L6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0455000 LjG1.1_chr2 94810699 94814329 -
2 domain predictions
 –
LotjaGi2g1v0455000.2
n.a. Protein OBERON 1; TAIR: AT1G05410.1 CDPK adapter, putative (DUF1423); Swiss-Prot: sp|Q9S736|OBE1_ARATH Protein OBERON 1; TrEMBL-Plants: tr|A0A1J7H3L6|A0A1J7H3L6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0455000 LjG1.1_chr2 94810699 94814329 -
2 domain predictions
 –
LotjaGi3g1v0549900.1
n.a. Oberon-like protein; TAIR: AT3G63500.2 fibronectin type III domain protein (DUF1423); Swiss-Prot: sp|Q84TI3|OBE4_ARATH Protein OBERON 4; TrEMBL-Plants: tr|V7AD13|V7AD13_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0549900 LjG1.1_chr3 96677514 96683405 -
2 domain predictions
 –
LotjaGi4g1v0302100.1
n.a. Protein VERNALIZATION INSENSITIVE 3; TAIR: AT4G30200.3 vernalization5/VIN3-like protein; Swiss-Prot: sp|Q9SUM4|VIL2_ARATH VIN3-like protein 2; TrEMBL-Plants: tr|I1MSQ1|I1MSQ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0302100 LjG1.1_chr4 67714085 67719869 +
2 domain predictions
 –
LotjaGi4g1v0302100.2
n.a. Protein VERNALIZATION INSENSITIVE 3; TAIR: AT4G30200.1 vernalization5/VIN3-like protein; Swiss-Prot: sp|Q9SUM4|VIL2_ARATH VIN3-like protein 2; TrEMBL-Plants: tr|I1MSQ1|I1MSQ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0302100 LjG1.1_chr4 67715889 67719167 +
2 domain predictions
 –
LotjaGi4g1v0357900.1
n.a. Protein OBERON 3; TAIR: AT1G14740.1 class I heat shock protein, putative (DUF1423); Swiss-Prot: sp|Q94B71|OBE3_ARATH Protein OBERON 3; TrEMBL-Plants: tr|I1K3D1|I1K3D1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0357900 LjG1.1_chr4 73657435 73661405 -
2 domain predictions
 –
LotjaGi4g1v0451000.1
n.a. Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.2 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|K7L4U6|K7L4U6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0451000 LjG1.1_chr4 82310720 82317544 +
2 domain predictions
 –
LotjaGi4g1v0451000.2
n.a. Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.2 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|K7L4U6|K7L4U6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0451000 LjG1.1_chr4 82314061 82316761 +
2 domain predictions
 –
LotjaGi4g1v0451000.3
n.a. Protein VERNALIZATION INSENSITIVE 3; TAIR: AT3G24440.2 Fibronectin type III domain-containing protein; Swiss-Prot: sp|Q9LHF5|VIL1_ARATH VIN3-like protein 1; TrEMBL-Plants: tr|K7L4U6|K7L4U6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0451000 LjG1.1_chr4 82314172 82316761 +
2 domain predictions
 –
LotjaGi5g1v0313000.1
n.a. Protein OBERON 1; TAIR: AT1G05410.1 CDPK adapter, putative (DUF1423); Swiss-Prot: sp|Q9S736|OBE1_ARATH Protein OBERON 1; TrEMBL-Plants: tr|A0A1J7H3L6|A0A1J7H3L6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0313000 LjG1.1_chr5 63161430 63166017 -
2 domain predictions
 –
LotjaGi6g1v0023200.1
n.a. Potyviral VPg interacting protein 2; TAIR: AT5G48160.1 potyvirus VPg interacting protein (DUF1423); Swiss-Prot: sp|Q84N37|PVIP_PEA OBERON-like protein; TrEMBL-Plants: tr|V7BM29|V7BM29_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0023200 LjG1.1_chr6 4332173 4334316 -
2 domain predictions
 –