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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0009700 |
| Transcript ID | LotjaGi1g1v0009700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sterile alpha motif (SAM) domain-containing protein; TAIR: AT3G07760.1 Sterile alpha motif (SAM) domain-containing protein; Swiss-Prot: sp|P18160|SPLA_DICDI Dual specificity protein kinase splA; TrEMBL-Plants: tr|I3S178|I3S178_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0009700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1225957..1230262) extracted from Lotus japonicus Gifu genome v1.2.
CTACCGACCGATGAGATAGTGAAATACTACCAAAAGCAAATAAAAAAATGGAAAATAATAAAACAATTAGTTCCAAAAAA ATAAATAAGGATTAAGGAGTGAAAGAGGGAGACAGGATGACGGCAAGAAGGGGGGGATGAACCAATCGTGAGTAGTGAAT GGCGCGTGGTTATATAATGCAGTGGAGGCGCGTGGGAAACATGAAACACGTTAAGATGCAACCTTGAACTGAATTAAGGT TCTTTCTTTCTCTCTCTAAACTCAACTCATCACCACTTTCCCTCTCTCTCTCTTCTCCTTCATCTCAAATGTTGAATTTC TTCTTATTATTTTTCATTTTTAACTGAATTTTCACTCGCTCTAAGTGGTAAGCATTTTTTTTCCTTTAATTTTATCCATT TTTTCATTCTAATTATTGTTTTTTCCCCCGGAAATTTTGTACTTGAGATCTTAGCTCAATCTCAGTGTGTTTACCTAATC TTCTCCTTGTTTGTGTGACCCTTTTTCATTTTCTCATCTGGGTATAGTTTATTATTGATTTTCTCCGGAAAAAATTGTTT TTTTCTTTCTTTTGATGAGCTGTTTGGTCCCTCTGTTCAGGTGTGTTTGGGGAAGTTTGATTCAGGAAATGAACAAAGGA CAATCACCAGAGCCTCTTGATTTCTTCATCTGGACTGTTGAGGTTGATAATTTCTTCCCCCTTTATTCAATTTTCCAACA ATTTAATATTTTTCAATTATTGTTTATATTTTCCAAAATTTCTTTTTATTCATGGCCTTTTTTTTATATGATTTGTACTC TCAACACATAATCAGATCTTTTGCAAAGTTAGTTTAACCAGAAAAACATGTTTGGAAATTCAATTTTAAAGTCAAAGTTA ACTATGGGAGAAGCTACTGTGAGCAGCTTCTAGGTGAAATTTCTCTATGGAAGTCTATGTAGTGATACTCATTTGCTTTG TTAATTATGCTGCGTAATAGCCTTGATAAATGAGCTAAGTGAGTTAGTTAGAGTTTGTTAATAGTTTGTGAGGAAGTTAA CAATCTATTGTTAGGAGATAGTTTATCTATTGATGTATATAAACTTTGTATAGTAATGAAATCAATGAAGGAATTCATTT TCCCCAATTTACCTCTTGTAATGAATTATCTGATAGAATGATATATCTGGCTGTCTGTGATCATCTTTTCCCTTTCTGAT TTTTTTTCCCTTTCTTCATACAATGATGTTATGTTGGTTTTTAATAGTTACCATGTTATACTATGTCTTGTTAGCAATTT AGCACAACAGTTGGTGTGTATTTCTGTTTTCCTTTCTATCCCTCTTTCAATTTGAAGTAGAAACTTTGGTTCTTACCTGC AAATCTTATTACCGTAACTGAACTTTAATTCATGTTTAGAGTCACAAGTTATCTGGTTTTATTTAAGTGATTGTTTGGTT CTCAGTTAGGAACCTTAACCAAAAGTTAAGAGAGAATTTTGAGTTGAAAAAGATGGAAATTGTTCGGATAAATTTTTATG GATGAAAATTTTGTTTCCAGACACAGGAATTGAAGTCTAAGAAAAGTGTCATTGACCTTACTTTTCAGTACGGATATTTT CATGTTACCTATTAAATTACATTTTCATCCATTATTTATGGGCAGTTACATTGATTGAAGCTTTTTGATTGTACTGCATC TGTATATAATGTATTTTTTAGTAAATTCAATCATTCTTTGAAACACGCTCATCTCTCTCACTCCCAAACAAAATTCATTC TCCCAAACTTAATTCTACTAAATTTACTTCTTTTTTGGTTACAAGAGGAAAATTACTAAATTTACTTCTATCAAACTTTA GACAATTTGTTCAATTCTCCAGTTTGATAGTTGATACTCACAGTTTCTATTATCATTTACAAATTAGAGGTTAACCTATT AGTCACAGGAGCAAGTATTCATATTGATGAGTTCCTACAGTAAAGCTTTCCCATAAGCATTTTTTCAAGTCATTGCATTT CAAATTGTTGTTGCAATTATAGCTTGTGAATATAGCATCTGAAAGTAGAAAGCGAATTTATTATTTGTCTTGGTTATGCC CTCAGTCCCGGTTCTTTTATCAGTAATGTGACTAATTTTTCCTTGTCACCAGTTGCTCAGTTAAGTAGATTATTAGAGCT GTACGTTAATTTGAACTGCAAATTTATATTGATAAAGATGCATCATCTTGCTATTCTACTTCAATGCTGCATTATGTGTG ACAATGCTTTATTATCAATGAATGACATAATGTAGTAAGCTCAGGAATACGTCTACTATGGCCTTTTTTTTCCAATTCAT TTATGTTACTATCTGGTGAATTGTGCGTATTAGTAAGAGTTATGGTGATGAGGATCTAACCTTGGTAAACACAATCTTTT GACTGCTTCTTCTTTATGTGCTGTGATAACGAACAACAAATGATGCATCTCCATGGCAGAAAAAAAAATGTAACTAAAAA TACAAGCTAACAGCAGTTTCCTCGCTCATCTTTTGTCTTTTTTATCAGGATGTTGGCATGTGGCTGGAGTCCATAAATCT TGGTAGTTATCGCCAAATGTTTAAGGAAAATGGTATTAATGGAGAATACCTGGAAGGAATGTCTATGTTCACGACTGAAC AGATCCTTCGTTTCATACGACGTTGCCACATGAAATGGGGAGACTTCATCACATTGTGCAAGGAATTAAGACGGATTAAA GGTCTCTCTCTCCCCGCTTAAAACAGTCAAAAGTTAAAAAAACATGCCAATAAACTCATTTGATTCTTTGTTTTGTTATC AATCTGCTTCATTTCATGCCATAAGGAAATGGAAACACGAATAGACTAGATGATGGATTAAAGGATATGTTTTGGCTATG TTTGGATATCTAATAACTGGGCATATAGTGGTATAGAATAGAATAGAATGAAATTACCAAATGCTATTGTTTGGATATTT TATTATAGAACAAGTTGAAGATTCCATTACATTGTTTTGGAAGTGTGTGGAATTGTAGACATTAGCAGACAATAAATTGG TTTACCCCCATTCCATCTACAATACATGACCCTCGAATTAGTGGAAGAAGAGTAAAGGTAATGGATGGAATGGAATGTAT TGATTAAGTTCCATCCCATTGTATCCTATTTTAAATGATTCAAACAATGACGAATAATCTCATTCCATTCACTTCATTTC ATATATTTCCATCAATTTAGATGTAGTCTTGGTATTACTAATGTGAGATATACCTAGAAATTGATATGCTGCACCTGTTA TTGGTTCTGCTACCACTTTGATAGAGGCAACCATCAAGTGGGTCTCATCCTAGCACGCAAGTTTCTAATCTTTTTATGCA ATATAGTGAAGACTGTTTGTGGAGTACATTTTCTTGAAGCGCTCATTCCCAATGGAAGCAGATAATAAGTCTGCACTATA TTCCTTTTTGTAGGTTGAAATGTCTGGTTATCCCAAACTTGTTAAAATGTCACTTCCTTAAACATGTGATGTGTTTGTAA ACAAGGAGACATGGAATGTGCATATGCTTCTTCTATTTTGTTGTTTTGTAACTTTCCCTTACAAGATTATATTCTTGTGA AGATTATATTCTTGTGACAACATTAAAGTGGGGGGAGGAAGGAAATTTTAACCACAGCAAATTGTTGGAAAAAATGCCCC TATGTGTTATATAGTTTAGTTTTAATACATGGTTAGTGTAAAACTCATTGACATCCAATCATTTCATGCCACATCAGCTT ACATGTTATGGCACAGTTAAGTGATTTATCATTTTAATTTAATTTTTGATGTGACAAACAATCATTGGACGCCAGTGTAG AAGAGTTTTGCACAGACAATGTATATATATTAAATCCTTTATAATATGTTCCTAACTTTGTGCACTATTGTTCATGTCTA TAGTGGCTTGTTTGAAAGGGGAGCAAAAAGTCCGACGGCCATGGTGGGCGCCGGCATGTCTATCTACAGTGTTCTCAAAG GTTGCAAAATGCAACAGACAATCAAGAGTTGTTTCCTTGAAGCTGGAACCTTGATGCATTACAACCTCTACATATGTTTT TTACGTATAGCAATTTTCTTTTTGCCTAGATAACAGAAGATAGTAAAGGACAATTTATAGCTTTTTTTTTCCCTTTCTTT CTATTCGAAAACGTGGTTGTTTGTTCTCCTCTGGAGAACTCTTATGTAGAAGGTCCTTGTGCACTAATCACTGGTGCTGT GTAATTATGTATTATCTCCTATATGAAACAAAAATACGATATGTGCTGTTGCATTTCCACTTCCAA
CDS sequence (LotjaGi1g1v0009700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACAAAGGACAATCACCAGAGCCTCTTGATTTCTTCATCTGGACTGTTGAGGATGTTGGCATGTGGCTGGAGTCCAT AAATCTTGGTAGTTATCGCCAAATGTTTAAGGAAAATGGTATTAATGGAGAATACCTGGAAGGAATGTCTATGTTCACGA CTGAACAGATCCTTCGTTTCATACGACGTTGCCACATGAAATGGGGAGACTTCATCACATTGTGCAAGGAATTAAGACGG ATTAAAGTGGCTTGTTTGAAAGGGGAGCAAAAAGTCCGACGGCCATGGTGGGCGCCGGCATGTCTATCTACAGTGTTCTC AAAGGTTGCAAAATGCAACAGACAATCAAGAGTTGTTTCCTTGAAGCTGGAACCTTGA
Protein sequence (LotjaGi1g1v0009700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNKGQSPEPLDFFIWTVEDVGMWLESINLGSYRQMFKENGINGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRR IKVACLKGEQKVRRPWWAPACLSTVFSKVAKCNRQSRVVSLKLEP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 125 | 125 | 4.5E-80 | – | |
| SUPERFAMILY | 6 | 85 | 80 | 2.43E-14 | ||
| Gene3D | 12 | 85 | 74 | 4.9E-10 | ||
| Pfam | 15 | 51 | 37 | 2.3E-9 | ||
| ProSiteProfiles | 15 | 50 | 36 | 11.707 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0009700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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