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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001660
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 22 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.401s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v1464140.1
n.a. Bicaudal C-like protein [Medicago truncatula] gi|357520541|ref|XP_003630559.1| chr1 17505591 17507068 +
4 domain predictions
1 GO term
Lj1g3v1798520.1
n.a. PREDICTED: DNA cross-link repair protein SNM1-like [Cicer arietinum] gi|502132540|ref|XP_004501410.1| chr1 21609385 21613868 +
4 domain predictions
1 GO term
Lj1g3v3137960.1
n.a. SAM domain family protein [Medicago truncatula] gi|357502717|ref|XP_003621647.1| chr1 35799489 35801787 +
4 domain predictions
1 GO term
Lj1g3v4763560.1
n.a. Sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana] gi|18399394|ref|NP_566404.1| chr1 57116802 57118622 +
4 domain predictions
1 GO term
Lj2g3v0026940.1
n.a. SAM domain family protein [Medicago truncatula] gi|357464317|ref|XP_003602440.1| chr2 553538 556412 +
2 domain predictions
1 GO term
Lj2g3v1368240.2
n.a. SAM domain family protein [Medicago truncatula] gi|357486169|ref|XP_003613372.1| chr2 21529174 21536793 +
4 domain predictions
1 GO term
Lj2g3v3337520.1
n.a. F17A17.10 protein [Theobroma cacao] gi|508701574|gb|EOX93470.1| chr2 42362339 42366060 +
3 domain predictions
1 GO term
Lj3g3v0730120.1
n.a. Sterile alpha motif domain-containing protein isoform 1 [Theobroma cacao] gi|508701987|gb|EOX93883.1| chr3 8203567 8210944 +
4 domain predictions
1 GO term
Lj3g3v0730120.2
n.a. Sterile alpha motif domain-containing protein isoform 1 [Theobroma cacao] gi|508701987|gb|EOX93883.1| chr3 8203567 8210944 +
4 domain predictions
1 GO term
Lj4g3v0147780.1
n.a. Bicaudal C-like protein [Medicago truncatula] gi|357520541|ref|XP_003630559.1| chr4 1499449 1501130 -
4 domain predictions
1 GO term
Lj4g3v2882140.1
n.a. Bicaudal C-like protein [Medicago truncatula] gi|357520541|ref|XP_003630559.1| chr4 38560375 38562987 +
4 domain predictions
1 GO term
LotjaGi1g1v0009700.1
n.a. Sterile alpha motif (SAM) domain-containing protein; TAIR: AT3G07760.1 Sterile alpha motif (SAM) domain-containing protein; Swiss-Prot: sp|P18160|SPLA_DICDI Dual specificity protein kinase splA; TrEMBL-Plants: tr|I3S178|I3S178_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0009700 LjG1.1_chr1 1225253 1230148 -
3 domain predictions
1 GO term
LotjaGi1g1v0009700.2
n.a. Sterile alpha motif (SAM) domain-containing protein; TAIR: AT3G07760.1 Sterile alpha motif (SAM) domain-containing protein; Swiss-Prot: sp|P18160|SPLA_DICDI Dual specificity protein kinase splA; TrEMBL-Plants: tr|I3S178|I3S178_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0009700 LjG1.1_chr1 1225957 1230262 -
3 domain predictions
1 GO term
LotjaGi1g1v0009700.3
n.a. Sterile alpha motif (SAM) domain-containing protein; TAIR: AT3G07760.1 Sterile alpha motif (SAM) domain-containing protein; Swiss-Prot: sp|P18160|SPLA_DICDI Dual specificity protein kinase splA; TrEMBL-Plants: tr|I3S178|I3S178_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0009700 LjG1.1_chr1 1226209 1227793 -
3 domain predictions
1 GO term
LotjaGi1g1v0302500.1
n.a. Mitochondrial import inner membrane translocase subunit TIM22; TAIR: AT5G24650.1 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein; Swiss-Prot: sp|Q6NKU9|TI223_ARATH Mitochondrial import inner membrane translocase subunit TIM22-3; TrEMBL-Plants: tr|I1JYE9|I1JYE9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0302500 LjG1.1_chr1 73753110 73756737 +
2 domain predictions
1 GO term
LotjaGi1g1v0334600.1
n.a. Sterile alpha motif (SAM) domain-containing protein; TAIR: AT3G48800.1 Sterile alpha motif (SAM) domain-containing protein; Swiss-Prot: sp|Q9H694|BICC1_HUMAN Protein bicaudal C homolog 1; TrEMBL-Plants: tr|I1JXP2|I1JXP2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0334600 LjG1.1_chr1 79317342 79319179 +
4 domain predictions
1 GO term
LotjaGi1g1v0372700.1
n.a. DNA cross-link repair 1A protein; TAIR: AT2G45700.1 sterile alpha motif (SAM) domain-containing protein; Swiss-Prot: sp|Q38961|SNM1_ARATH DNA cross-link repair protein SNM1; TrEMBL-Plants: tr|A0A151QYV3|A0A151QYV3_CAJCA DNA cross-link repair 1A protein; Found in the gene: LotjaGi1g1v0372700 LjG1.1_chr1 85102438 85108710 +
4 domain predictions
1 GO term
LotjaGi1g1v0529300.1
n.a. Sterile alpha motif (SAM) domain-containing protein; TAIR: AT3G48800.1 Sterile alpha motif (SAM) domain-containing protein; Swiss-Prot: sp|Q24009|BICC_DROME Protein bicaudal C; TrEMBL-Plants: tr|I1KWR9|I1KWR9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0529300 LjG1.1_chr1 105586183 105588916 +
4 domain predictions
1 GO term
LotjaGi1g1v0741900.1
n.a. Sterile alpha motif (SAM) domain-containing protein; TAIR: AT3G11890.1 Sterile alpha motif (SAM) domain-containing protein; Swiss-Prot: sp|Q24009|BICC_DROME Protein bicaudal C; TrEMBL-Plants: tr|I1JQD2|I1JQD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0741900 LjG1.1_chr1 131582653 131584910 +
4 domain predictions
1 GO term
LotjaGi2g1v0314000.1
n.a. Sterile alpha motif (SAM) domain-containing protein; TAIR: AT1G70180.1 Sterile alpha motif (SAM) domain-containing protein; Swiss-Prot: sp|Q6NZC7|S23IP_MOUSE SEC23-interacting protein; TrEMBL-Plants: tr|I3S5V0|I3S5V0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0314000 LjG1.1_chr2 78890479 78900264 +
4 domain predictions
1 GO term
LotjaGi3g1v0085200.1
n.a. Sterile alpha motif (SAM) domain-containing protein; TAIR: AT3G07170.1 Sterile alpha motif (SAM) domain-containing protein; Swiss-Prot: sp|Q9Y6Y8|S23IP_HUMAN SEC23-interacting protein; TrEMBL-Plants: tr|I3T340|I3T340_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0085200 LjG1.1_chr3 9603308 9611450 -
4 domain predictions
1 GO term
LotjaGi4g1v0420200.1
n.a. Sterile alpha motif (SAM) domain-containing protein; TAIR: AT3G48800.1 Sterile alpha motif (SAM) domain-containing protein; Swiss-Prot: sp|Q9IA00|BIC1A_XENLA Protein bicaudal C homolog 1-A; TrEMBL-Plants: tr|G7LI38|G7LI38_MEDTR SAM domain protein; Found in the gene: LotjaGi4g1v0420200 LjG1.1_chr4 79554719 79557984 -
4 domain predictions
1 GO term