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LotjaGi1g1v0009700.3

Overview

Field	Value
Gene ID	LotjaGi1g1v0009700
Transcript ID	LotjaGi1g1v0009700.3
Related isoforms 2	LotjaGi1g1v0009700.1 LotjaGi1g1v0009700.2
Lotus japonicus genome version	Gifu v1.2
Description	Sterile alpha motif (SAM) domain-containing protein; TAIR: AT3G07760.1 Sterile alpha motif (SAM) domain-containing protein; Swiss-Prot: sp\|P18160\|SPLA_DICDI Dual specificity protein kinase splA; TrEMBL-Plants: tr\|I3S178\|I3S178_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0009700
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:1226209..1227793) extracted from Lotus japonicus Gifu genome v1.2.

GTAACTAAAAATACAAGCTAACAGCAGTTTCCTCGCTCATCTTTTGTCTTTTTTATCAGGATGTTGGCATGTGGCTGGAG TCCATAAATCTTGGTAGTTATCGCCAAATGTTTAAGGAAAATGGTATTAATGGAGAATACCTGGAAGGAATGTCTATGTT CACGACTGAACAGATCCTTCGTTTCATACGACGTTGCCACATGAAATGGGGAGACTTCATCACATTGTGCAAGGAATTAA GACGGATTAAAGGTCTCTCTCTCCCCGCTTAAAACAGTCAAAAGTTAAAAAAACATGCCAATAAACTCATTTGATTCTTT GTTTTGTTATCAATCTGCTTCATTTCATGCCATAAGGAAATGGAAACACGAATAGACTAGATGATGGATTAAAGGATATG TTTTGGCTATGTTTGGATATCTAATAACTGGGCATATAGTGGTATAGAATAGAATAGAATGAAATTACCAAATGCTATTG TTTGGATATTTTATTATAGAACAAGTTGAAGATTCCATTACATTGTTTTGGAAGTGTGTGGAATTGTAGACATTAGCAGA CAATAAATTGGTTTACCCCCATTCCATCTACAATACATGACCCTCGAATTAGTGGAAGAAGAGTAAAGGTAATGGATGGA ATGGAATGTATTGATTAAGTTCCATCCCATTGTATCCTATTTTAAATGATTCAAACAATGACGAATAATCTCATTCCATT CACTTCATTTCATATATTTCCATCAATTTAGATGTAGTCTTGGTATTACTAATGTGAGATATACCTAGAAATTGATATGC TGCACCTGTTATTGGTTCTGCTACCACTTTGATAGAGGCAACCATCAAGTGGGTCTCATCCTAGCACGCAAGTTTCTAAT CTTTTTATGCAATATAGTGAAGACTGTTTGTGGAGTACATTTTCTTGAAGCGCTCATTCCCAATGGAAGCAGATAATAAG TCTGCACTATATTCCTTTTTGTAGGTTGAAATGTCTGGTTATCCCAAACTTGTTAAAATGTCACTTCCTTAAACATGTGA TGTGTTTGTAAACAAGGAGACATGGAATGTGCATATGCTTCTTCTATTTTGTTGTTTTGTAACTTTCCCTTACAAGATTA TATTCTTGTGAAGATTATATTCTTGTGACAACATTAAAGTGGGGGGAGGAAGGAAATTTTAACCACAGCAAATTGTTGGA AAAAATGCCCCTATGTGTTATATAGTTTAGTTTTAATACATGGTTAGTGTAAAACTCATTGACATCCAATCATTTCATGC CACATCAGCTTACATGTTATGGCACAGTTAAGTGATTTATCATTTTAATTTAATTTTTGATGTGACAAACAATCATTGGA CGCCAGTGTAGAAGAGTTTTGCACAGACAATGTATATATATTAAATCCTTTATAATATGTTCCTAACTTTGTGCACTATT GTTCATGTCTATAGTGGCTTGTTTGAAAGGGGAGCAAAAAGTCCGACGGCCATGGTGGGCGCCGGCATGTCTATCTACAG TGTTCTCAAAGGTTGCAAAATGCAACAGACAATCAAGAGTTGTTTCCTTGAAGCTGGAACCTTGA

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0009700.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTGGCTGGAGTCCATAAATCTTGGTAGTTATCGCCAAATGTTTAAGGAAAATGGTATTAATGGAGAATACCTGGAAGG AATGTCTATGTTCACGACTGAACAGATCCTTCGTTTCATACGACGTTGCCACATGAAATGGGGAGACTTCATCACATTGT GCAAGGAATTAAGACGGATTAAAGTGGCTTGTTTGAAAGGGGAGCAAAAAGTCCGACGGCCATGGTGGGCGCCGGCATGT CTATCTACAGTGTTCTCAAAGGTTGCAAAATGCAACAGACAATCAAGAGTTGTTTCCTTGAAGCTGGAACCTTGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0009700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MWLESINLGSYRQMFKENGINGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPAC LSTVFSKVAKCNRQSRVVSLKLEP

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR47626 View details on PTHR47626 Search for proteins/transripts with this domain View external data on PTHR47626	1	104	104	2.0E-67	–
ProSiteProfiles	PS50105 View details on PS50105 Search for proteins/transripts with this domain View external data on PS50105	1	29	29	8.674	IPR001660 Show description in modal box View details on IPR001660 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:1.10.150.50 View details on G3DSA:1.10.150.50 Search for proteins/transripts with this domain View external data on G3DSA:1.10.150.50	1	41	41	5.8E-6	IPR013761 Show description in modal box View details on IPR013761 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF07647 View details on PF07647 Search for proteins/transripts with this domain View external data on PF07647	2	30	29	1.6E-5	IPR001660 Show description in modal box View details on IPR001660 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF47769 View details on SSF47769 Search for proteins/transripts with this domain View external data on SSF47769	2	64	63	8.73E-8	IPR013761 Show description in modal box View details on IPR013761 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005515 View details of GO:0005515 AmiGO InterPro QuickGO	Molecular function	Protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).	Subterm of View details of GO:0005488

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0009700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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