Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0015400 |
| Transcript ID | LotjaGi1g1v0015400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD repeat-containing protein; TAIR: AT5G63010.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q55C80|DPH7_DICDI Diphthine methyltransferase homolog; TrEMBL-Plants: tr|G7KEH9|G7KEH9_MEDTR Transducin/WD-like repeat-protein; Found in the gene: LotjaGi1g1v0015400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1984433..1987476) extracted from Lotus japonicus Gifu genome v1.2.
CTAGCTAGACATGGAGTGTGTTCCCGTGTTTGCGTTGTTGAGAGCCCTGACTCGGAGTTAGATTACTTCTTGTTGAGGAA CTCATTTGTGGTCCGTTAGTTGTTTTGGTGTTGCTTAGTTTTTCGACGAAGAAAAAAAAAAATTGATACTTTGGGCATTG TTGAAGCCCAATTCATAATAATTTCACAGAAAAGGTTTTTTTTGTTTGTTTCAAACTTAAACTAAAATTGGACCAAAAAA AAAAACAAAATTTCCGGGTGGTGGCTCTCAACAACGCAGGTATCGCAGGTTTTGAAGGAAAAATAAAGTCACAAACTGGG TGGTGGCTCGTTGGACTGCGACGGCGATCGCGGAGGCGTCGACGGACGGCGTGAAGAAGATTGGGTCCCTTGCTTATTGT TGGAGGCGCTGCCATCGTCGATGAGAGTGGGGGACGCAAACAAGTAGACGCAGTGAGGTGCTTGGCTGAGCATGGTGGTC GCTGGATCTGCGGTGGTTGCATGCTTAATGACGGTCGAGGTAGGTGGACCAAGTACTACAGCTACGATCTGAAACTCGCC GTTTTAGAAATTGAAGTAGTTTTTGATTTCTAACTAATCGAATTTCTACTCTATTATATATATATATATATTGCATTATT GATTGTAATGATAATAGCACTTACTTGATTAATTCTTTCTGCATAAATTTGTGTCATCTTCTCACTTACATTACACTCAT ATTTTTCTCATTCCAGATTTCTCATAATTTTTCTCATTGAGCTAGTTGGGCTATCATTTGATTAACATGGATGTAGCACA TTGCTACTTAGATGGTAATGCTGATGCTGTGGAGTTTTGTTCACATGATTCGAATCGCGATGTTCTAGCAGCATCTACTT ACACTCTACATGAAGGTGATCAGCCTAGTCGATATGGAAGCATTTCACTTTTCAATATTGATGTGGAGACAAGCCACTTT GACATGGTGTATAGTGAGGAGACTTGTGGGATTTTTGACATAAAGTGGAACCCTCCTGCGGGGCATGTGAATCTGTTTCT AGCTCAAGCAGATGCTGATGGATACTTGAGAATTAAAACGCTGGAGGGTGGTTGTGATGCAGCACAAGGTATGGATTAAG TCCTTGGTTCATTTCTATAAAGCTATATTCAGTAGGGAGTACAAGCATGATTCTCGATGTTTTGTTTGTTTAATTGTATG ATTGGGAGTCTTAGAGTCAATTCTCATTGACCAGAATCACTTTCATTGTTCAATATTTATGGAATTTCATAACTGGATTT CACAACATTACACTATAGAAATCACTTTTCTCATAAACGCATCCAAACATAAATCACTTCTCTTTCAACTCACTTCTACC ATAACCACTTTCACTAAAATCAATTCTATCCAAAATGAATCTGACAATGTTATTGCTAATCCAAAAATGCCAATGTCTTC TTCAGTAGGGCACCAGTAGACACATATTCATTAACAGTTCACTGTCAAAGTATGAAAATGCCAAAGTTAACATTGCTTCT TTGTCAATGCAGTCTAAAACACTCACCATGACACTGATATTTACGACATCCTAATATCAGGTTTAGTTCTTATTTTTGGC CATTCCTAGGCATGTTTCCTGTTACTGTTTTATTATCCTCTCTTTCTAAGCATAAGGTTTTGTTCCGTGTATAGTATTGT ATGTATGGAATACTTCAATACTACTTACTCAGACTATCTGACAAAATTTACAATTACCTTGTAGTTTCATTAGTGGCTGT TGAGTTTAATAGCACTAAAAGATTGGTTTTCTATTACAAAACACAACCTCTTTATCATTAAAGTTTAAGCACTTCCTTCT ACATATCAAAGTTTCTTGTTTGTTGATAAAATAGTGAGACATTCATGAGTTAGGCAAAGAAACATTCAAGAGATACTGAC ATATATTGATAGACTCGTTTAGGACTTTATATTCTTCCGAACTTTGTATTTTGCCAATCAATTTGCTCTCATTTTTCTGC CCTGTTTCTTTATATTAAGATTTGTTATTGATTCTATGGCAGGGGTTCATCTAAAAGAGATGACAAGTGAAAAAATAAGC AACTATATGTGTCTATACCTTGATTGGAACCCTTCAGCCACATCCATCACTGTAGGTCTTTCTGATGGTTCTGTGTCTAT TGTTTCTCTTCTTGAATCAAAGCTAGAAATACAGGAAGAGTGGAAGGCACATGATTTTGAACTCTGGACAACATGCTTTG ATATCCACCAGCCAAACTTGGTATACACCGGCTCCGATGATTGTAAGTTCAGTTGTTGGGATTTGCGTGATGGTCCTTCC AAGCGAGTATTTCAGAACTCTAAAGCCCACAAAATGGGTGTTTGTTGCATTCAAAAGAGTCCTCATGACCCAAATAGCCT ATTAACAGGGAGTTATGATGAATTTTTGAGAGTGTGGGATGTAAGATCAATCTTGAAACCCATTAATGAGATTTCAATTA GTCTAGGGGGAGGAGTGTGGAGGGTGAAGCACCACCCCTTTGTTCCAGGCCTGGTCTTGGCTGCATGTATGCACAATGGT TTTGCAATTGTTTCCATTAAAGGTGATAAAGCTGAAGTGTTGGAAACTTACAAGAAGCATGATTCCCTTGCATATGGAGC AGACTGGCACAAAGGAGAAGCAAGTCAGATAGGTGGGAGAACCAAACCACTAGTGGCTACTTGCTCCTTCTATGACAAAC TTGTCAGATTATGGAGGCCAGAAAATGATATTATGTTGTGATTGATGGTTAGGGTTTGTCCAATTTGGAAATGTACTGCA TAACTTTATTATTGAATCATGGTTGCATTAAACATGGAATTATTACACTTCCATTTGCCTTTAATCTTCATTTCAGACCT GTTCTTTCACTGTTATCGTACCCCAACTAGAATCACATGATATTTATCTGCCATATATGACCTCAAATTGCAATGATATC ATCCCATTGCCACTGGCTTTATCCTGGTTTATGGTTTTGGGTTGCAATGGTTCATTGTTTGCCAAATGTTAATGTGTGTG TTCG
CDS sequence (LotjaGi1g1v0015400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGTAGCACATTGCTACTTAGATGGTAATGCTGATGCTGTGGAGTTTTGTTCACATGATTCGAATCGCGATGTTCT AGCAGCATCTACTTACACTCTACATGAAGGTGATCAGCCTAGTCGATATGGAAGCATTTCACTTTTCAATATTGATGTGG AGACAAGCCACTTTGACATGGTGTATAGTGAGGAGACTTGTGGGATTTTTGACATAAAGTGGAACCCTCCTGCGGGGCAT GTGAATCTGTTTCTAGCTCAAGCAGATGCTGATGGATACTTGAGAATTAAAACGCTGGAGGGTGGTTGTGATGCAGCACA AGGGGTTCATCTAAAAGAGATGACAAGTGAAAAAATAAGCAACTATATGTGTCTATACCTTGATTGGAACCCTTCAGCCA CATCCATCACTGTAGGTCTTTCTGATGGTTCTGTGTCTATTGTTTCTCTTCTTGAATCAAAGCTAGAAATACAGGAAGAG TGGAAGGCACATGATTTTGAACTCTGGACAACATGCTTTGATATCCACCAGCCAAACTTGGTATACACCGGCTCCGATGA TTGTAAGTTCAGTTGTTGGGATTTGCGTGATGGTCCTTCCAAGCGAGTATTTCAGAACTCTAAAGCCCACAAAATGGGTG TTTGTTGCATTCAAAAGAGTCCTCATGACCCAAATAGCCTATTAACAGGGAGTTATGATGAATTTTTGAGAGTGTGGGAT GTAAGATCAATCTTGAAACCCATTAATGAGATTTCAATTAGTCTAGGGGGAGGAGTGTGGAGGGTGAAGCACCACCCCTT TGTTCCAGGCCTGGTCTTGGCTGCATGTATGCACAATGGTTTTGCAATTGTTTCCATTAAAGGTGATAAAGCTGAAGTGT TGGAAACTTACAAGAAGCATGATTCCCTTGCATATGGAGCAGACTGGCACAAAGGAGAAGCAAGTCAGATAGGTGGGAGA ACCAAACCACTAGTGGCTACTTGCTCCTTCTATGACAAACTTGTCAGATTATGGAGGCCAGAAAATGATATTATGTTGTG A
Protein sequence (LotjaGi1g1v0015400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDVAHCYLDGNADAVEFCSHDSNRDVLAASTYTLHEGDQPSRYGSISLFNIDVETSHFDMVYSEETCGIFDIKWNPPAGH VNLFLAQADADGYLRIKTLEGGCDAAQGVHLKEMTSEKISNYMCLYLDWNPSATSITVGLSDGSVSIVSLLESKLEIQEE WKAHDFELWTTCFDIHQPNLVYTGSDDCKFSCWDLRDGPSKRVFQNSKAHKMGVCCIQKSPHDPNSLLTGSYDEFLRVWD VRSILKPINEISISLGGGVWRVKHHPFVPGLVLAACMHNGFAIVSIKGDKAEVLETYKKHDSLAYGADWHKGEASQIGGR TKPLVATCSFYDKLVRLWRPENDIML
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 343 | 342 | 8.2E-127 | – | |
| SUPERFAMILY | 8 | 339 | 332 | 1.0E-32 | ||
| Gene3D | 105 | 345 | 241 | 2.9E-33 | ||
| SMART | 115 | 149 | 35 | 410.0 | ||
| SMART | 154 | 194 | 41 | 0.31 | ||
| ProSiteProfiles | 161 | 249 | 89 | 12.341 | ||
| SMART | 200 | 240 | 41 | 8.4E-5 | ||
| ProSiteProfiles | 207 | 243 | 37 | 10.575 | ||
| Pfam | 208 | 240 | 33 | 0.058 | ||
| ProSitePatterns | 227 | 241 | 15 | - | ||
| SMART | 290 | 339 | 50 | 0.93 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0015400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…