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LotjaGi1g1v0017400.1

Overview

Field Value
Gene ID LotjaGi1g1v0017400
Transcript ID LotjaGi1g1v0017400.1
Lotus japonicus genome version Gifu v1.2
Description Serine acetyltransferase; TAIR: AT3G13110.1 serine acetyltransferase 2;2; Swiss-Prot: sp|Q39218|SAT3_ARATH Serine acetyltransferase 3, mitochondrial; TrEMBL-Plants: tr|A0A1J7HSB9|A0A1J7HSB9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0017400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:2180303..2183018) extracted from Lotus japonicus Gifu genome v1.2.

TATTGCTTAAAATATCCTTATTTCAGGACTCAGTTCCTCTGTTGCTTGTGTTTATTCAAAGTTGTGGTCTCTGCTTTGTC TTTGTCTCGTTAACCTTTTGACTCACGAACCTTACCTCGTTTGCACAGTTTCTCACAGAGCACCATGGTGAGAAGGCGCT TCCTAACCTCCATTGTTTCTCCAACAAAACAACAAGGGTCCCATCATTCTTCTTCACCTCTTGCTTACACCTCTCTTCCC TCCATGCCAATGCTTCCTTCTTCAATTCCACCTCCCCAGATCCCAAAAACCCTTGATCACTCATGGGGTTGCTCCAAAAG CTTCACTTGTCAAGTTCCACCCTTACCCGTCTGCAAATATGGTGTCAAAACCCTGCACACTCGTTCAGATGTGGAGGAAG ATGCAGCAAACGAGGTTGAAGTTGATGTATGGATGAAGATGAAAGAAGAAGCTGTAGAAGATGTCACAGTGGAACCTATT CTTTCTACTTACTATGACACCTTCATTTTGTCTCATAGGTCGTTGGAAAGTTCTTTGGCCAATCACCTTGCTGTGAAACT GAGCAGTGCTAGCCTTCCAAGCACTACCCTTTATGATCTTTTCCTGGGAGTTTTGGAAGGTGACCAGGGAATCATGGATT CTGTGAAAGATGATCTGAAGGCTGTGAAGGAGAGGGACCCTGCTTGTATTAGCCACGTGCACTGTTTCTTGAACTTCAAA GGCTTTTTGGCATGCCAGGCTCATAGGGTGGCTCATAGATTGTGGTCACAAGGGAGGAAAGTTCTGGCATTTATGATTCA GAATAGGGTTTCTGAGGTTGGTTGAGATTAATATGAATCAGCATTTTTACTAGAGTTTATTTGGTTTAATTGTAGAACTT CTAATATTATGAACATTGTTACTGGTGGTAGATGTAGTGCTTGTTTCATGTTTTGATACACGGTAGATTTTCACATTGAA AGGAGAATTGATTCTAGTAGAAGCTACTCCTAGTAGTTTTTGTGGTGGCAGAATCGATTCTGGAAGATCTGAACATGAAT CTACATGCTAGTAGTAGTGAGAGTTGTGAGTTATGAGTTAAGTTATGAGCTGTTGCAGATTTATGGGTAATTTTATTTCT GATTTACTTACACATTAATAGGAAGAATTGTTATCATTTGTAAAGTTATGATTTTCTTGTTATTAAAAGATGTTAGTATG AATGAAAGTATGTGAGTTTCAACTTTTAATTTATAGACTTCTAATTTCTCCTTTAATTCCAACAAGGTTTTTGCAGTGGA TATTCACCCTGGAGCTAAGATTGGAAGTGGGATTTTGCTGGATCATGCAACTGGGATTGTGGTGGGAGAGACTGCTGTGA TTGGGAATGATGTGTCAATCTTGCACAGTGTCACATTGGGAGGGACTGGTAAAACCTCTGGGGATAGGCACCCTAAGATT GGTGATGGGGTGCTGATAGGTGCTGGGACTTGTATTTTGGGGAACATTATGGTGGGTGCTGGGGCTAAGATTGGTGCTGG TTCAGTGGTGATCAAGGATGTGCCTCCAAGGACCACAGTTGTTGGGAACCCGGCTAAGTTGGTGGGAGGGAAGAACCCTG TTAAATTGGACAAGATTCCAAGCCATACCATGGATCATACTTCAAATATTTCTGAGTTTTATGATTATTGTGTTTAGTTT AGTCCTCAAGCATGTTTTGCAGTTTTATCATGTGTAGCACTGTAGTATAGAATAAGTGATTTGGACAGGGGGTTCTTGTT TGTTGTGTAAGAGAGAATCTTAGTTCTCCTTCTAACAACAACACAAGGTGATATGTTATGAGTGTAGTTGGTTTAGAAGC CTCAGTCACCTCTGTGGAGAAGCTATGGTTCGTGTATGTTTGGAAACCCTTTTACATTTGATCCCGAAGCAAGAATTAAT TATGGGAAGAAGCTTATGTGAGTAGCTTCTGGATTTCAGAATTGATTCTGACGAAAAATAAGCTTATTCATGTTAGAAAT TGAAGTTTCCGTGCTTAGGATTGTGTGGCACCATAATTCATGAGTGCTCTCAGGAATATGGAATAAGATATGCACAGGCT GCATTTTATGTTTGTGATGTTGCAAGGTACTAGTACCACCCTGTTACATACCACATGAATAACTACATGAATTTGGCATC TGTTGCTTTCATTTCCTGTTTTATAGATTGAGTGATTTGGACAGGGGGGTTCTTGTTTGTTGTGTAAGAGAGAATCTTAG TTCTTCTAACAATCACAAAAAGTGGAATTATAAGAAGACTACTCTCAGAAATATGCGTGTGTTTGGATTTTCGTTGAATT CAACACGGCAAAATCTTGTCTCTCTGTTGGTACTTTGAGATACATAAAATCACTATCTTTGTCTCAATGCAAAAGTAAAC ATACACTATGGTATTAGATATCTGTATTTTATGTTTGTGATGTGTCAAGGTGCTAGCAGCACCCATTGTTACATACCACA TGAATAATACTACATGAATTTCACATGTGTTGCTTTCATTTCCTGCTTTAAGAAAAGGTAGAGTTGAGAGGCTCCTAATC AGTAATTGAGATGTTCACTTGCTTCAATTTCAAGTATCAAACAGAAAAGTTTACTTGGTGTAAAAAAAGTAGAAAACCAA TTGATTTTGATGCATAAATTTAAGGAATCACATAGGGCTAATGATATGTTCTTGTAAATATCATCAAGGAACAGCA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0017400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGAGAAGGCGCTTCCTAACCTCCATTGTTTCTCCAACAAAACAACAAGGGTCCCATCATTCTTCTTCACCTCTTGC TTACACCTCTCTTCCCTCCATGCCAATGCTTCCTTCTTCAATTCCACCTCCCCAGATCCCAAAAACCCTTGATCACTCAT GGGGTTGCTCCAAAAGCTTCACTTGTCAAGTTCCACCCTTACCCGTCTGCAAATATGGTGTCAAAACCCTGCACACTCGT TCAGATGTGGAGGAAGATGCAGCAAACGAGGTTGAAGTTGATGTATGGATGAAGATGAAAGAAGAAGCTGTAGAAGATGT CACAGTGGAACCTATTCTTTCTACTTACTATGACACCTTCATTTTGTCTCATAGGTCGTTGGAAAGTTCTTTGGCCAATC ACCTTGCTGTGAAACTGAGCAGTGCTAGCCTTCCAAGCACTACCCTTTATGATCTTTTCCTGGGAGTTTTGGAAGGTGAC CAGGGAATCATGGATTCTGTGAAAGATGATCTGAAGGCTGTGAAGGAGAGGGACCCTGCTTGTATTAGCCACGTGCACTG TTTCTTGAACTTCAAAGGCTTTTTGGCATGCCAGGCTCATAGGGTGGCTCATAGATTGTGGTCACAAGGGAGGAAAGTTC TGGCATTTATGATTCAGAATAGGGTTTCTGAGGTTTTTGCAGTGGATATTCACCCTGGAGCTAAGATTGGAAGTGGGATT TTGCTGGATCATGCAACTGGGATTGTGGTGGGAGAGACTGCTGTGATTGGGAATGATGTGTCAATCTTGCACAGTGTCAC ATTGGGAGGGACTGGTAAAACCTCTGGGGATAGGCACCCTAAGATTGGTGATGGGGTGCTGATAGGTGCTGGGACTTGTA TTTTGGGGAACATTATGGTGGGTGCTGGGGCTAAGATTGGTGCTGGTTCAGTGGTGATCAAGGATGTGCCTCCAAGGACC ACAGTTGTTGGGAACCCGGCTAAGTTGGTGGGAGGGAAGAACCCTGTTAAATTGGACAAGATTCCAAGCCATACCATGGA TCATACTTCAAATATTTCTGAGTTTTATGATTATTGTGTTTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0017400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVRRRFLTSIVSPTKQQGSHHSSSPLAYTSLPSMPMLPSSIPPPQIPKTLDHSWGCSKSFTCQVPPLPVCKYGVKTLHTR SDVEEDAANEVEVDVWMKMKEEAVEDVTVEPILSTYYDTFILSHRSLESSLANHLAVKLSSASLPSTTLYDLFLGVLEGD QGIMDSVKDDLKAVKERDPACISHVHCFLNFKGFLACQAHRVAHRLWSQGRKVLAFMIQNRVSEVFAVDIHPGAKIGSGI LLDHATGIVVGETAVIGNDVSILHSVTLGGTGKTSGDRHPKIGDGVLIGAGTCILGNIMVGAGAKIGAGSVVIKDVPPRT TVVGNPAKLVGGKNPVKLDKIPSHTMDHTSNISEFYDYCV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP_GRAM_POSITIVE
SignalP-TM
1 21 21 - –
PANTHER
PTHR42811:SF13
3 360 358 2.0E-177 –
PANTHER
PTHR42811
3 360 358 2.0E-177 –
Gene3D
G3DSA:1.10.3130.10
78 228 151 1.1E-56
IPR042122
SUPERFAMILY
SSF51161
95 330 236 1.39E-62
IPR011004
Pfam
PF06426
95 199 105 1.5E-33
IPR010493
SMART
SM00971
95 199 105 1.4E-44
IPR010493
TIGRFAM
TIGR01172
167 328 162 1.4E-68
IPR005881
CDD
cd03354
226 326 101 3.91269E-53 –
Gene3D
G3DSA:2.160.10.10
229 350 122 8.3E-37 –
Pfam
PF00132
279 313 35 5.4E-8
IPR001451
ProSitePatterns
PS00101
288 316 29 -
IPR018357

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0006535
Biological process Cysteine biosynthetic process from serine The chemical reactions and pathways resulting in the formation of cysteine from other compounds, including serine.
Subterm of
GO:0009001
Molecular function Serine O-acetyltransferase activity Catalysis of the reaction: L-serine + acetyl-CoA = O-acetyl-L-serine + CoA.
Subterm of
GO:0016740
Molecular function Transferase activity Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0017400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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