Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001451
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 42 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.044s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0139179.1
n.a. PREDICTED: translation initiation factor eIF-2B subunit epsilon-like [Cicer arietinum] gi|502124571|ref|XP_004498583.1| chr0 63721951 63731186 +
2 domain predictions
 –
Lj0g3v0357059.1
n.a. PREDICTED: serine acetyltransferase 3, mitochondrial-like [Cicer arietinum] gi|502099520|ref|XP_004491499.1| chr0 188000767 188002500 -
2 domain predictions
 –
Lj1g3v0415810.1
n.a. PREDICTED: mannose-1-phosphate guanyltransferase alpha-like [Cicer arietinum] gi|502133994|ref|XP_004501963.1| chr1 5534392 5539669 +
2 domain predictions
 –
Lj1g3v0415810.2
n.a. PREDICTED: mannose-1-phosphate guanyltransferase alpha-like isoform 2 [Glycine max] gi|356516712|ref|XP_003527037.1| chr1 5534947 5539669 +
2 domain predictions
 –
Lj1g3v2124850.1
n.a. PREDICTED: gamma carbonic anhydrase 1, mitochondrial-like [Cucumis sativus] gi|449469963|ref|XP_004152688.1| chr1 25415565 25419363 +
2 domain predictions
 –
Lj1g3v3598300.1
n.a. PREDICTED: UDP-3-O-[3]-hydroxymyristoyl] gi|356495807|ref|XP_003516764.1| chr1 41443073 41450705 -
2 domain predictions
 –
Lj2g3v0911690.1
n.a. PREDICTED: acyl-[acyl]-carrier-protein] gi|356523129|ref|XP_003530194.1| chr2 13870777 13876180 +
2 domain predictions
 –
Lj2g3v1022230.1
n.a. Mannose-1-phosphate guanyltransferase alpha-B [Medicago truncatula] gi|357496183|ref|XP_003618380.1| chr2 15987789 15992390 +
2 domain predictions
 –
Lj2g3v1731280.1
n.a. Transcription factor APFI-like protein [Medicago truncatula] gi|357483549|ref|XP_003612061.1| chr2 26712878 26715548 -
2 domain predictions
 –
Lj2g3v1731290.1
n.a. PREDICTED: gamma carbonic anhydrase 1, mitochondrial-like [Cicer arietinum] gi|502161184|ref|XP_004512067.1| chr2 26713210 26715931 -
2 domain predictions
 –
Lj2g3v2645150.1
n.a. PREDICTED: mannose-1-phosphate guanylyltransferase 1-like [Cicer arietinum] gi|502097080|ref|XP_004490906.1| chr2 35679458 35682477 +
2 domain predictions
 –
Lj2g3v2657260.1
n.a. PREDICTED: probable mannose-1-phosphate guanylyltransferase 1-like [Brachypodium distachyon] gi|357112936|ref|XP_003558261.1| chr2 35759216 35759958 +
2 domain predictions
 –
Lj3g3v2400830.1
n.a. PREDICTED: serine acetyltransferase 5-like [Cicer arietinum] gi|502157027|ref|XP_004510733.1| chr3 29805940 29807323 -
2 domain predictions
 –
Lj4g3v2603960.1
n.a. PREDICTED: translation initiation factor eIF-2B subunit gamma-like [Cicer arietinum] gi|502140769|ref|XP_004504330.1| chr4 34996832 34999829 -
2 domain predictions
 –
Lj5g3v2045280.1
n.a. PREDICTED: translation initiation factor eIF-2B subunit epsilon-like [Cicer arietinum] gi|502124571|ref|XP_004498583.1| chr5 29050243 29059571 -
2 domain predictions
 –
Lj6g3v0776100.1
n.a. PREDICTED: serine acetyltransferase 3, mitochondrial-like [Cicer arietinum] gi|502146996|ref|XP_004506688.1| chr6 7449157 7451019 +
2 domain predictions
 –
Lj6g3v0776110.1
n.a. PREDICTED: serine acetyltransferase 1, chloroplastic-like [Glycine max] gi|356524352|ref|XP_003530793.1| chr6 7449438 7450383 +
2 domain predictions
 –
LotjaGi1g1v0017400.1
n.a. Serine acetyltransferase; TAIR: AT3G13110.1 serine acetyltransferase 2;2; Swiss-Prot: sp|Q39218|SAT3_ARATH Serine acetyltransferase 3, mitochondrial; TrEMBL-Plants: tr|A0A1J7HSB9|A0A1J7HSB9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0017400 LjG1.1_chr1 2180303 2183018 +
2 domain predictions
 –
LotjaGi1g1v0086800.1
n.a. Mannose-1-phosphate guanyltransferase, putative; TAIR: AT2G39770.1 Glucose-1-phosphate adenylyltransferase family protein; Swiss-Prot: sp|O22287|GMPP1_ARATH Mannose-1-phosphate guanylyltransferase 1; TrEMBL-Plants: tr|G7KGV6|G7KGV6_MEDTR Mannose-1-phosphate guanylyltransferase-like protein; Found in the gene: LotjaGi1g1v0086800 LjG1.1_chr1 12540002 12543491 -
2 domain predictions
 –
LotjaGi1g1v0086800.2
n.a. Mannose-1-phosphate guanyltransferase, putative; TAIR: AT2G39770.1 Glucose-1-phosphate adenylyltransferase family protein; Swiss-Prot: sp|O22287|GMPP1_ARATH Mannose-1-phosphate guanylyltransferase 1; TrEMBL-Plants: tr|G7KGV6|G7KGV6_MEDTR Mannose-1-phosphate guanylyltransferase-like protein; Found in the gene: LotjaGi1g1v0086800 LjG1.1_chr1 12540628 12542237 -
2 domain predictions
 –
LotjaGi1g1v0184100.1
n.a. Glucose-1-phosphate adenylyltransferase family protein; TAIR: AT1G74910.1 ADP-glucose pyrophosphorylase family protein; Swiss-Prot: sp|Q86HG0|GMPPA_DICDI Mannose-1-phosphate guanyltransferase alpha; TrEMBL-Plants: tr|V7AXV4|V7AXV4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0184100 LjG1.1_chr1 36015085 36020559 +
2 domain predictions
 –
LotjaGi1g1v0420300.1
n.a. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase; TAIR: AT1G19580.1 gamma carbonic anhydrase 1; Swiss-Prot: sp|Q9FWR5|GCA1_ARATH Gamma carbonic anhydrase 1, mitochondrial; TrEMBL-Plants: tr|I3T7V2|I3T7V2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0420300 LjG1.1_chr1 91389466 91394043 +
2 domain predictions
 –
LotjaGi1g1v0421100.2
n.a. Glucose-1-phosphate adenylyltransferase; TAIR: AT1G27680.1 ADPGLC-PPase large subunit; Swiss-Prot: sp|P55233|GLGL1_BETVU Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic; TrEMBL-Plants: tr|I3S8A5|I3S8A5_LOTJA Glucose-1-phosphate adenylyltransferase; Found in the gene: LotjaGi1g1v0421100 LjG1.1_chr1 91492267 91492690 -
2 domain predictions
 –
LotjaGi1g1v0566100.4
n.a. Glucose-1-phosphate adenylyltransferase; TAIR: AT2G21590.1 Glucose-1-phosphate adenylyltransferase family protein; Swiss-Prot: sp|Q00081|GLGL1_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 1; TrEMBL-Plants: tr|I1K764|I1K764_SOYBN Glucose-1-phosphate adenylyltransferase; Found in the gene: LotjaGi1g1v0566100 LjG1.1_chr1 109958117 109959258 +
2 domain predictions
 –
LotjaGi2g1v0231800.1
n.a. Acyl-[acyl]-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; TAIR: AT4G29540.2 bacterial transferase hexapeptide repeat-containing protein; Swiss-Prot: sp|Q9SU91|LPXA_ARATH Probable acyl-[acyl]-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial; TrEMBL-Plants: tr|A0A072UJ42|A0A072UJ42_MEDTR UDP-N-acetylglucosamine acyltransferase; Found in the gene: LotjaGi2g1v0231800 LjG1.1_chr2 69092338 69098091 +
2 domain predictions
 –
LotjaGi2g1v0252300.1
n.a. Glucose-1-phosphate adenylyltransferase family protein; TAIR: AT1G74910.1 ADP-glucose pyrophosphorylase family protein; Swiss-Prot: sp|Q86HG0|GMPPA_DICDI Mannose-1-phosphate guanyltransferase alpha; TrEMBL-Plants: tr|G7KJH0|G7KJH0_MEDTR Glucose-1-phosphate adenylyltransferase family protein; Found in the gene: LotjaGi2g1v0252300 LjG1.1_chr2 71786083 71791401 +
2 domain predictions
 –
LotjaGi2g1v0252300.3
n.a. Glucose-1-phosphate adenylyltransferase family protein; TAIR: AT1G74910.1 ADP-glucose pyrophosphorylase family protein; Swiss-Prot: sp|Q86HG0|GMPPA_DICDI Mannose-1-phosphate guanyltransferase alpha; TrEMBL-Plants: tr|G7KJH0|G7KJH0_MEDTR Glucose-1-phosphate adenylyltransferase family protein; Found in the gene: LotjaGi2g1v0252300 LjG1.1_chr2 71786370 71790797 +
2 domain predictions
 –
LotjaGi2g1v0356400.1
n.a. Serine acetyltransferase; TAIR: AT4G35640.1 serine acetyltransferase 3;2; Swiss-Prot: sp|Q8W2B8|SAT4_ARATH Serine acetyltransferase 4; TrEMBL-Plants: tr|K7LNN3|K7LNN3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0356400 LjG1.1_chr2 83287102 83291604 -
2 domain predictions
 –
LotjaGi2g1v0387900.1
n.a. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase; TAIR: AT1G19580.1 gamma carbonic anhydrase 1; Swiss-Prot: sp|Q9FWR5|GCA1_ARATH Gamma carbonic anhydrase 1, mitochondrial; TrEMBL-Plants: tr|A0A151TIB2|A0A151TIB2_CAJCA Uncharacterized protein DDB-G0288155; Found in the gene: LotjaGi2g1v0387900 LjG1.1_chr2 88401501 88405221 -
2 domain predictions
 –
LotjaGi3g1v0292200.3
n.a. AMP-dependent synthetase and ligase family protein; TAIR: AT1G20480.1 AMP-dependent synthetase and ligase family protein; Swiss-Prot: sp|B2HIM0|FAA28_MYCMM Long-chain-fatty-acid--AMP ligase FadD28; TrEMBL-Plants: tr|A0A0B2RJD7|A0A0B2RJD7_GLYSO Long-chain-fatty-acid--AMP ligase FadD28; Found in the gene: LotjaGi3g1v0292200 LjG1.1_chr3 59515704 59523564 -
2 domain predictions
 –
LotjaGi3g1v0392000.1
n.a. Serine acetyltransferase; TAIR: AT5G56760.1 serine acetyltransferase 1;1; Swiss-Prot: sp|Q42538|SAT5_ARATH Serine acetyltransferase 5; TrEMBL-Plants: tr|A0A072TYU4|A0A072TYU4_MEDTR Serine acetyltransferase; Found in the gene: LotjaGi3g1v0392000 LjG1.1_chr3 79052752 79058757 -
2 domain predictions
 –
LotjaGi3g1v0392000.4
n.a. Serine acetyltransferase; TAIR: AT5G56760.1 serine acetyltransferase 1;1; Swiss-Prot: sp|Q42538|SAT5_ARATH Serine acetyltransferase 5; TrEMBL-Plants: tr|A0A072TYU4|A0A072TYU4_MEDTR Serine acetyltransferase; Found in the gene: LotjaGi3g1v0392000 LjG1.1_chr3 79057446 79058622 -
2 domain predictions
 –
LotjaGi4g1v0374900.1
n.a. Translation initiation factor eIF-2B subunit gamma; TAIR: AT5G19485.1 transferases/nucleotidyltransferase; Swiss-Prot: sp|Q54FQ8|EI2BG_DICDI Translation initiation factor eIF-2B subunit gamma; TrEMBL-Plants: tr|V7CR36|V7CR36_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0374900 LjG1.1_chr4 75393595 75398301 -
2 domain predictions
 –
LotjaGi5g1v0309800.1
n.a. Translation initiation factor eIF-2B subunit epsilon; TAIR: AT2G34970.1 Trimeric LpxA-like enzyme; Swiss-Prot: sp|P56287|EI2BE_SCHPO Probable translation initiation factor eIF-2B subunit epsilon; TrEMBL-Plants: tr|V7BQ00|V7BQ00_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0309800 LjG1.1_chr5 62790095 62799705 -
2 domain predictions
 –
LotjaGi5g1v0309800.2
n.a. Translation initiation factor eIF-2B subunit epsilon; TAIR: AT2G34970.1 Trimeric LpxA-like enzyme; Swiss-Prot: sp|P56287|EI2BE_SCHPO Probable translation initiation factor eIF-2B subunit epsilon; TrEMBL-Plants: tr|V7BQ00|V7BQ00_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0309800 LjG1.1_chr5 62790789 62799329 -
2 domain predictions
 –
LotjaGi6g1v0066600.1
n.a. Mannose-1-phosphate guanyltransferase, putative; TAIR: AT2G39770.1 Glucose-1-phosphate adenylyltransferase family protein; Swiss-Prot: sp|O22287|GMPP1_ARATH Mannose-1-phosphate guanylyltransferase 1; TrEMBL-Plants: tr|A0A151QQL5|A0A151QQL5_CAJCA Mannose-1-phosphate guanyltransferase beta; Found in the gene: LotjaGi6g1v0066600 LjG1.1_chr6 12613449 12618116 -
2 domain predictions
 –
LotjaGi6g1v0066600.2
n.a. Mannose-1-phosphate guanyltransferase, putative; TAIR: AT2G39770.1 Glucose-1-phosphate adenylyltransferase family protein; Swiss-Prot: sp|O22287|GMPP1_ARATH Mannose-1-phosphate guanylyltransferase 1; TrEMBL-Plants: tr|A0A151QQL5|A0A151QQL5_CAJCA Mannose-1-phosphate guanyltransferase beta; Found in the gene: LotjaGi6g1v0066600 LjG1.1_chr6 12613491 12618158 -
2 domain predictions
 –
LotjaGi6g1v0066600.3
n.a. Mannose-1-phosphate guanyltransferase, putative; TAIR: AT2G39770.1 Glucose-1-phosphate adenylyltransferase family protein; Swiss-Prot: sp|O22287|GMPP1_ARATH Mannose-1-phosphate guanylyltransferase 1; TrEMBL-Plants: tr|A0A151QQL5|A0A151QQL5_CAJCA Mannose-1-phosphate guanyltransferase beta; Found in the gene: LotjaGi6g1v0066600 LjG1.1_chr6 12613585 12618039 -
2 domain predictions
 –
LotjaGi6g1v0066600.4
n.a. Mannose-1-phosphate guanyltransferase, putative; TAIR: AT2G39770.1 Glucose-1-phosphate adenylyltransferase family protein; Swiss-Prot: sp|O22287|GMPP1_ARATH Mannose-1-phosphate guanylyltransferase 1; TrEMBL-Plants: tr|A0A151QQL5|A0A151QQL5_CAJCA Mannose-1-phosphate guanyltransferase beta; Found in the gene: LotjaGi6g1v0066600 LjG1.1_chr6 12613888 12615144 -
2 domain predictions
 –
LotjaGi6g1v0066600.5
n.a. Mannose-1-phosphate guanyltransferase, putative; TAIR: AT2G39770.1 Glucose-1-phosphate adenylyltransferase family protein; Swiss-Prot: sp|O22287|GMPP1_ARATH Mannose-1-phosphate guanylyltransferase 1; TrEMBL-Plants: tr|A0A151QQL5|A0A151QQL5_CAJCA Mannose-1-phosphate guanyltransferase beta; Found in the gene: LotjaGi6g1v0066600 LjG1.1_chr6 12613888 12615867 -
2 domain predictions
 –
LotjaGi6g1v0066600.6
n.a. Mannose-1-phosphate guanyltransferase, putative; TAIR: AT2G39770.1 Glucose-1-phosphate adenylyltransferase family protein; Swiss-Prot: sp|O22287|GMPP1_ARATH Mannose-1-phosphate guanylyltransferase 1; TrEMBL-Plants: tr|A0A151QQL5|A0A151QQL5_CAJCA Mannose-1-phosphate guanyltransferase beta; Found in the gene: LotjaGi6g1v0066600 LjG1.1_chr6 12613888 12615867 -
2 domain predictions
 –
LotjaGi6g1v0145100.1
n.a. Serine acetyltransferase; TAIR: AT3G13110.1 serine acetyltransferase 2;2; Swiss-Prot: sp|Q39218|SAT3_ARATH Serine acetyltransferase 3, mitochondrial; TrEMBL-Plants: tr|V7BNI1|V7BNI1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0145100 LjG1.1_chr6 41634638 41636507 +
2 domain predictions
 –