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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0019000 |
| Transcript ID | LotjaGi1g1v0019000.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor-like protein; TAIR: AT5G41020.1 myb family transcription factor; Swiss-Prot: sp|Q9Y222|DMTF1_HUMAN Cyclin-D-binding Myb-like transcription factor 1; TrEMBL-Plants: tr|I1LYQ8|I1LYQ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0019000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2364922..2368728) extracted from Lotus japonicus Gifu genome v1.2.
GTCGAAAGTTCTCAACCTAGCTTATTGAATTAAAAACATTTGATATATATGACATTTGTGATGTACTGTAAAATAAAATT CCAACAATTTTAATTTAAATTTTACCAACACACTCTTCTCGAACTCTCTCAGTTCACGATTCAAAATCAAAGACACAGGG ATTAGGGTTTCAACATTCACGATTCTCTCACGCCGCCGCAATCGCCCGATAGCCACCGCCGGTAAGTTCCCCATCTCTTT CTCCGCCACTCACTATCTGCACATGTGAAGAATCGTTTTCTCTCTTTTTCCCATTCACGGATCGATCGTTAAGTTGAATC ATTCACCAGTTTTCGTCGTTTCATTTTCTCCGGTTTCATTGAATTCACAACTCGTTTTCTTCAATCATGGAAGATGTAGC GAATCCCTTTTTTCTTCACCGTTCATTTTTGTGAATAACGAATAATCTGACTGACTTTGATTAAGTGAAGCCTACCACAT AATTCTCATGAAACCTTACTCTTCAATTAGCTGTTTTTGCTCTGAAACCTTGCTGTATTCATTCATTTTTACATATTTTG GGTCTGCAGATTCATTACTGAAATTTTGGCTTTCACAAATGGATGTTTAGAACATGTTATGTGTTTTATAATTAGGAGAA TTTTGACTCTGTTGTTAGTTTGTTACAGTAATTTATGTGTACCAATTTTAATTTTAATTCTGTTGATATGGTGATCCTGT GAATCTACAGGCTGCAAGTTGTGATTCTGTTGTTATTGGAAAATAAGGTGAAATGACAGAGGAAAGTGATAGTCAAGGGA ACAAGTTGGAGAAGAAGAAACTACACAAGAAAAGTAAAAGGCCAAGAGACTGTGAAACCAGCAATGGAGGTGATGATTCG GTGGTCACGGAAGAAAGGCAAGGCAAGAAGATGAAGTTGGACAAGGTATTCAGCAAGGAAGATGGTAGAACTGAAGATGA AGATCATGACCAAGGTAAGAAGATGAAGAAGAAAAAGAAGCTGAGTGAAGAAACCAAACCAGATGACCGAGGCAAGGAGA TGAAAAAGAATAAGAAGGAGAAACTAATTGAAGAAAGCAAAAGTGAGGAAGAGTATAACAAGTTGAGAAGCAATGAAGGT GAAGATGGTGACCAAGGCAAGAAGAAGAAAAAGAATAAGAAGGAGAAACTAATTGAAGAAAGCAAAAGTGAGGAAGAGTA TAACCAGTTGAGAAGCAATGAAGGTGAAGATGGTGACCAAGGCAAGAAGATGAAGAAGAAAAAGAAGCTGAGTGACAAGA GCAAAAGTAAGAACAGTGAGTTTAATAGCAATGAAGGCGAAGACAATGACCGAGGCAAGGAGATGAAAAAGAATAAGAAG AAAAAATCAATTGAAGAAAGCAAAAGTGAGGAAGAGCATAACCAGTTGAGAAGCAATGAAGGTGAAGATGGTGACCAAGG CAAGAAGATGAAGAAAAAGAAGCTGAGTGACAAGAGCAAAAGTAAGAACAGTGAGTTTAATAGCAATGATGGCGGATCCT CTTTGGCTAGTGTTGAGGAAGGAGATGCTAAAGCTTGTGGCGATGTCACTGAAGTTGATGATCAAAGCAAGAAAAAGAAG ACAAAAAAGAAAGCCAAGGCAGGTACTGATGAATCTACTATTCCTGCAGCACATGGCGAGAAGATGAAGAAAAAGAAGCT GAGTGATAAGAGCAAAAGTAAGATCAGTGAGTTTAATAGCAATGAAGGTGATCCCTCTTTGGCTAGTGTTGAGGAAGGAG ATGCTAAAGCTTGTGGCGATGTCACTGAAGTTGATGATCAAAGCAAGAAAAAGAAGACAAAAAAGAAAGCCAAGGCAGGT ACTGATGAATCTACTATTCCTGCAGCACATGGCGAAACATCCAAACCCAAACGAGTAACTTTTTCTGATCAAGTGGAGGT TTATGGTGATCAAGTGGAGGTTTGTGGTGATCAAGTGGAGGTTTGTGGTGATGATGATTTAGTGCGTGGGAAAAGGTTTA CACCAGAAGAAGATGAGAAGATCAAAGAGGCTGTTTCTGACTATATAGAGTCTCATGGTTTGGGAGATGAAGGTCTAAAA ATGATTCTCCATTGCATGTCACATCCTGAAGTTAGAGGTTGTTGGAAGGAAATTGGAGAAGCCTTGCCTCATAGGCCTCA TCAGAGTGTTTATTATCGTGCTCATATTATTTATGAAAGGGATGAGGCGCGTAAGTGGACACCTGAAGAGCTCGATTTTT TACTCAAGGCCCAGGATCAACATGGAAGTGATTGGAAATTAATTGCAGAAGCTTTAAATAAACATCGTCTTCATGTGAAG GATACATGGCGGAGAATAAGACGAACCAATGCAAACACAGGACGTTGGTCCCAAGATGAGTATCAAAGGTTATTTGATTT AGTAAACAAAGATCTATGCGCAAGAGCTGCAGAGGATTGTAGAAAAAATAAACACGGTATGTTGCGAGATAATGTTAGTT GGGAGGCAATCAGTGATGAGTTTGGCTCTAGAGCTAGTGCATTGTGCTGCATGAAGTGGTATCAGCAATTAACATCACCA ATGGTTGCTGATGGTATATGGAGTGATACTGATGACTACCGCCTGGTGAATGCTTTATATGCTTTGGATGCTTGCTCCAT GGAGGAGGTAGACTGGGACAATCTGCTTGAGCACAGGTCTGGTGATGTATGTAGAAAACGATGGCACCAAATGGTCAGAA ATATTAGAGAATATGCGGGGAAGTCTTTTGCTGAGCAGGTGGAAATTCTTTCAAAGAGATATCGCCCTGACTTAGTGGAA GCAAGAGAGGCATTTGATAGCAAACCTGTGGTTGGTTGAGGTTATGATCCTGTAAGGTAATTTTCTTAGGGTCAAATAAT TTTGTAAAACTAGAATGTATGATGTTTTTGTGGGATTATCCAAACTTTCTTTGCAAATTATTGAAGGCTATGATGTTTTT GTGGGATTATCCAAACTTTTTCTGCAAATTAGTAACTGGAGTTTGTATTGGATGGAGGTTTATGTTGTAAAATGTAAAAT ATCAATCTTGTTTACTGTCATCTATTTGCATTTTCTCTTCTATAATAAAAGCAGGTTTCTGGTATGTTACTTTCAATCAC CGTTTTTGTTACTGATTTTTTGTCAAATTACAATTTTGGTCAAATTAATCAATTTTTCTCACTTCTGCTTTGATGACACC AACTGGACTCTTGTTTAATTTCTAATTACATTTCCCTTACGGCACGTTGATGTTTTTACTTGTAGATCTTCTTTTTTTTA AAGAATTATATGTATATTTACAAAGATATAATTTTATTTGGGCCGAGTATATTCTTTATCAGATCACTGATTAATTTGAA TCAACCTGATAATCATTAATCCGCATTTTAGGTTGTGAGTTATATCTCCATTGTAGTTACTTTATAGAAGCGCTTCTTGA AATAATTACAACTAAATAACAAAGTTTATACAAAAATCAATGAAAGCACTTTTTTTTTAGATTAGTGGTACGTAGAAGTT TTACTTGTTGCGAACAAGCGCATAGATCGACTGGCCTTAATTGTTCTGGTTTAAGGAGAGGAGCTTGAACATGCTTCTAG TGAGGATACATGTGGTTAAAACTAAAAAATATTTGATGTCAACTAAGGAATACTTATAACTAGTTTATGACCCGTGCCAC GGGGAGTTTAATTTCGAATTTTTGTTTAAATTTTTTGAATAAATATTTTATACTATTTTTATTAATTAGAGTTATGTGCT CTTTTTAATATTTTTTTGCACATTTGTGTTTGTCTCTTTTTTAGTGT
CDS sequence (LotjaGi1g1v0019000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGAGGAAAGTGATAGTCAAGGGAACAAGTTGGAGAAGAAGAAACTACACAAGAAAAGTAAAAGGCCAAGAGACTG TGAAACCAGCAATGGAGGTGATGATTCGGTGGTCACGGAAGAAAGGCAAGGCAAGAAGATGAAGTTGGACAAGGTATTCA GCAAGGAAGATGGTAGAACTGAAGATGAAGATCATGACCAAGGTAAGAAGATGAAGAAGAAAAAGAAGCTGAGTGAAGAA ACCAAACCAGATGACCGAGGCAAGGAGATGAAAAAGAATAAGAAGGAGAAACTAATTGAAGAAAGCAAAAGTGAGGAAGA GTATAACAAGTTGAGAAGCAATGAAGGTGAAGATGGTGACCAAGGCAAGAAGAAGAAAAAGAATAAGAAGGAGAAACTAA TTGAAGAAAGCAAAAGTGAGGAAGAGTATAACCAGTTGAGAAGCAATGAAGGTGAAGATGGTGACCAAGGCAAGAAGATG AAGAAGAAAAAGAAGCTGAGTGACAAGAGCAAAAGTAAGAACAGTGAGTTTAATAGCAATGAAGGCGAAGACAATGACCG AGGCAAGGAGATGAAAAAGAATAAGAAGAAAAAATCAATTGAAGAAAGCAAAAGTGAGGAAGAGCATAACCAGTTGAGAA GCAATGAAGGTGAAGATGGTGACCAAGGCAAGAAGATGAAGAAAAAGAAGCTGAGTGACAAGAGCAAAAGTAAGAACAGT GAGTTTAATAGCAATGATGGCGGATCCTCTTTGGCTAGTGTTGAGGAAGGAGATGCTAAAGCTTGTGGCGATGTCACTGA AGTTGATGATCAAAGCAAGAAAAAGAAGACAAAAAAGAAAGCCAAGGCAGGTACTGATGAATCTACTATTCCTGCAGCAC ATGGCGAGAAGATGAAGAAAAAGAAGCTGAGTGATAAGAGCAAAAGTAAGATCAGTGAGTTTAATAGCAATGAAGGTGAT CCCTCTTTGGCTAGTGTTGAGGAAGGAGATGCTAAAGCTTGTGGCGATGTCACTGAAGTTGATGATCAAAGCAAGAAAAA GAAGACAAAAAAGAAAGCCAAGGCAGGTACTGATGAATCTACTATTCCTGCAGCACATGGCGAAACATCCAAACCCAAAC GAGTAACTTTTTCTGATCAAGTGGAGGTTTATGGTGATCAAGTGGAGGTTTGTGGTGATCAAGTGGAGGTTTGTGGTGAT GATGATTTAGTGCGTGGGAAAAGGTTTACACCAGAAGAAGATGAGAAGATCAAAGAGGCTGTTTCTGACTATATAGAGTC TCATGGTTTGGGAGATGAAGGTCTAAAAATGATTCTCCATTGCATGTCACATCCTGAAGTTAGAGGTTGTTGGAAGGAAA TTGGAGAAGCCTTGCCTCATAGGCCTCATCAGAGTGTTTATTATCGTGCTCATATTATTTATGAAAGGGATGAGGCGCGT AAGTGGACACCTGAAGAGCTCGATTTTTTACTCAAGGCCCAGGATCAACATGGAAGTGATTGGAAATTAATTGCAGAAGC TTTAAATAAACATCGTCTTCATGTGAAGGATACATGGCGGAGAATAAGACGAACCAATGCAAACACAGGACGTTGGTCCC AAGATGAGTATCAAAGGTTATTTGATTTAGTAAACAAAGATCTATGCGCAAGAGCTGCAGAGGATTGTAGAAAAAATAAA CACGGTATGTTGCGAGATAATGTTAGTTGGGAGGCAATCAGTGATGAGTTTGGCTCTAGAGCTAGTGCATTGTGCTGCAT GAAGTGGTATCAGCAATTAACATCACCAATGGTTGCTGATGGTATATGGAGTGATACTGATGACTACCGCCTGGTGAATG CTTTATATGCTTTGGATGCTTGCTCCATGGAGGAGGTAGACTGGGACAATCTGCTTGAGCACAGGTCTGGTGATGTATGT AGAAAACGATGGCACCAAATGGTCAGAAATATTAGAGAATATGCGGGGAAGTCTTTTGCTGAGCAGGTGGAAATTCTTTC AAAGAGATATCGCCCTGACTTAGTGGAAGCAAGAGAGGCATTTGATAGCAAACCTGTGGTTGGTTGA
Protein sequence (LotjaGi1g1v0019000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEESDSQGNKLEKKKLHKKSKRPRDCETSNGGDDSVVTEERQGKKMKLDKVFSKEDGRTEDEDHDQGKKMKKKKKLSEE TKPDDRGKEMKKNKKEKLIEESKSEEEYNKLRSNEGEDGDQGKKKKKNKKEKLIEESKSEEEYNQLRSNEGEDGDQGKKM KKKKKLSDKSKSKNSEFNSNEGEDNDRGKEMKKNKKKKSIEESKSEEEHNQLRSNEGEDGDQGKKMKKKKLSDKSKSKNS EFNSNDGGSSLASVEEGDAKACGDVTEVDDQSKKKKTKKKAKAGTDESTIPAAHGEKMKKKKLSDKSKSKISEFNSNEGD PSLASVEEGDAKACGDVTEVDDQSKKKKTKKKAKAGTDESTIPAAHGETSKPKRVTFSDQVEVYGDQVEVCGDQVEVCGD DDLVRGKRFTPEEDEKIKEAVSDYIESHGLGDEGLKMILHCMSHPEVRGCWKEIGEALPHRPHQSVYYRAHIIYERDEAR KWTPEELDFLLKAQDQHGSDWKLIAEALNKHRLHVKDTWRRIRRTNANTGRWSQDEYQRLFDLVNKDLCARAAEDCRKNK HGMLRDNVSWEAISDEFGSRASALCCMKWYQQLTSPMVADGIWSDTDDYRLVNALYALDACSMEEVDWDNLLEHRSGDVC RKRWHQMVRNIREYAGKSFAEQVEILSKRYRPDLVEAREAFDSKPVVG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 371 | 371 | - | – | |
| PANTHER | 6 | 687 | 682 | 3.4E-174 | – | |
| PANTHER | 6 | 687 | 682 | 3.4E-174 | – | |
| MobiDBLite | 38 | 161 | 124 | - | – | |
| MobiDBLite | 169 | 240 | 72 | - | – | |
| MobiDBLite | 260 | 274 | 15 | - | – | |
| MobiDBLite | 292 | 313 | 22 | - | – | |
| MobiDBLite | 332 | 346 | 15 | - | – | |
| ProSiteProfiles | 401 | 469 | 69 | 4.391 | ||
| SMART | 405 | 476 | 72 | 1.2E-4 | ||
| ProSiteProfiles | 476 | 527 | 52 | 10.033 | ||
| SMART | 478 | 525 | 48 | 3.9E-4 | ||
| SUPERFAMILY | 480 | 536 | 57 | 6.39E-9 | ||
| CDD | 481 | 510 | 30 | 4.91366E-4 | ||
| Pfam | 482 | 540 | 59 | 5.0E-12 | – | |
| Gene3D | 483 | 523 | 41 | 1.2E-10 | – | |
| ProSiteProfiles | 524 | 593 | 70 | 7.306 | ||
| Gene3D | 528 | 594 | 67 | 2.6E-5 | – | |
| SMART | 528 | 596 | 69 | 8.8 | ||
| SUPERFAMILY | 573 | 653 | 81 | 6.42E-5 | ||
| ProSiteProfiles | 595 | 648 | 54 | 7.445 | ||
| SMART | 599 | 650 | 52 | 63.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0019000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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