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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF13921
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 61 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.027s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0085519.1
n.a. PREDICTED: myb-like protein Q-like [Cicer arietinum] gi|502096160|ref|XP_004490644.1| chr0 34236187 34237669 +
1 domain prediction
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Lj0g3v0117159.1
n.a. PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Glycine max] gi|356548105|ref|XP_003542444.1| chr0 51629699 51632511 +
1 domain prediction
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Lj0g3v0117159.2
n.a. PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Glycine max] gi|356548105|ref|XP_003542444.1| chr0 51629699 51632511 +
1 domain prediction
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Lj0g3v0117159.3
n.a. PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Glycine max] gi|356548105|ref|XP_003542444.1| chr0 51629699 51632511 +
1 domain prediction
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Lj0g3v0196149.1
n.a. Helicase/SANT-associated, DNA binding protein [Arabidopsis thaliana] gi|42565171|ref|NP_189132.2| chr0 95644606 95657071 +
1 domain prediction
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Lj0g3v0260369.1
n.a. Myb-like DNA-binding protein BAS1 [Medicago truncatula] gi|358347472|ref|XP_003637780.1| chr0 135252428 135261507 -
1 domain prediction
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Lj0g3v0260369.2
n.a. Myb-like DNA-binding protein BAS1 [Medicago truncatula] gi|358347472|ref|XP_003637780.1| chr0 135252428 135261507 -
1 domain prediction
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Lj0g3v0324039.1
n.a. PHD finger protein 21A [Medicago truncatula] gi|357445323|ref|XP_003592939.1| chr0 169321991 169325623 -
1 domain prediction
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Lj0g3v0324039.2
n.a. PHD finger protein 21A [Medicago truncatula] gi|357445323|ref|XP_003592939.1| chr0 169321991 169325623 -
1 domain prediction
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Lj0g3v0337739.1
n.a. PREDICTED: transcription factor LAF1-like [Glycine max] gi|356518595|ref|XP_003527964.1| chr0 176889769 176891288 +
1 domain prediction
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Lj0g3v0349359.1
n.a. MYB domain class transcription factor [Malus domestica] gi|302398943|gb|ADL36766.1| chr0 183457204 183463118 +
1 domain prediction
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Lj0g3v0356309.1
n.a. PREDICTED: myb-like protein A-like [Cicer arietinum] gi|502129323|ref|XP_004500264.1| chr0 187661981 187662612 +
1 domain prediction
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Lj1g3v3182310.1
n.a. PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Glycine max] gi|356548105|ref|XP_003542444.1| chr1 36146046 36147185 +
1 domain prediction
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Lj1g3v4999560.1
n.a. PREDICTED: cell division cycle 5-like protein-like [Cicer arietinum] gi|502113713|ref|XP_004494735.1| chr1 60845809 60851473 +
1 domain prediction
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Lj2g3v0949390.1
n.a. Myb protein [Medicago truncatula] gi|357504247|ref|XP_003622412.1| chr2 15075561 15078350 -
1 domain prediction
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Lj2g3v1326410.1
n.a. Myb-related protein B [Medicago truncatula] gi|357486695|ref|XP_003613635.1| chr2 20839963 20846199 +
1 domain prediction
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Lj3g3v0718210.1
n.a. PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Glycine max] gi|356548105|ref|XP_003542444.1| chr3 7765383 7766854 -
1 domain prediction
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Lj3g3v0718220.1
n.a. PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Glycine max] gi|356548105|ref|XP_003542444.1| chr3 7765479 7768031 -
1 domain prediction
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Lj3g3v1631860.1
n.a. phantastica transcription factor a [Lotus japonicus] gi|60476408|gb|AAX21343.1| chr3 20764854 20767706 +
1 domain prediction
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Lj3g3v1631870.1
n.a. phantastica transcription factor b [Lotus japonicus] gi|60476410|gb|AAX21344.1| chr3 20770199 20773523 +
1 domain prediction
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Lj5g3v0659660.2
n.a. protein TRF-like 8 [Arabidopsis thaliana] gi|30687001|ref|NP_850275.1| chr5 9254626 9262695 +
1 domain prediction
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Lj5g3v0659660.3
n.a. protein TRF-like 8 [Arabidopsis thaliana] gi|30687001|ref|NP_850275.1| chr5 9260071 9262695 +
1 domain prediction
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LotjaGi1g1v0019000.1
n.a. Myb transcription factor-like protein; TAIR: AT5G41020.1 myb family transcription factor; Swiss-Prot: sp|Q9Y222|DMTF1_HUMAN Cyclin-D-binding Myb-like transcription factor 1; TrEMBL-Plants: tr|I1LYQ8|I1LYQ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0019000 LjG1.1_chr1 2364922 2368728 -
1 domain prediction
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LotjaGi1g1v0019000.2
n.a. Myb family transcription factor family protein; TAIR: AT5G41020.1 myb family transcription factor; Swiss-Prot: sp|Q9Y222|DMTF1_HUMAN Cyclin-D-binding Myb-like transcription factor 1; TrEMBL-Plants: tr|I1LYQ8|I1LYQ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0019000 LjG1.1_chr1 2364922 2368728 -
1 domain prediction
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LotjaGi1g1v0019000.3
n.a. Myb family transcription factor family protein; TAIR: AT5G41020.1 myb family transcription factor; Swiss-Prot: sp|Q9Y222|DMTF1_HUMAN Cyclin-D-binding Myb-like transcription factor 1; TrEMBL-Plants: tr|I1LYQ8|I1LYQ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0019000 LjG1.1_chr1 2364922 2368728 -
1 domain prediction
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LotjaGi1g1v0019000.4
n.a. Myb family transcription factor family protein; TAIR: AT5G41020.1 myb family transcription factor; Swiss-Prot: sp|Q9Y222|DMTF1_HUMAN Cyclin-D-binding Myb-like transcription factor 1; TrEMBL-Plants: tr|I1LYQ8|I1LYQ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0019000 LjG1.1_chr1 2365487 2368675 -
1 domain prediction
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LotjaGi1g1v0169900.1
n.a. MYB family protein; TAIR: AT5G02320.1 myb domain protein 3r-5; Swiss-Prot: sp|Q6R032|MB3R5_ARATH Transcription factor MYB3R-5; TrEMBL-Plants: tr|A0A067JXH6|A0A067JXH6_JATCU MYB family protein; Found in the gene: LotjaGi1g1v0169900 LjG1.1_chr1 32275331 32280092 +
1 domain prediction
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LotjaGi1g1v0358300.1
n.a. MYB-related transcription factor; TAIR: AT5G67300.1 myb domain protein r1; Swiss-Prot: sp|Q9FDW1|MYB44_ARATH Transcription factor MYB44; TrEMBL-Plants: tr|I3RSY8|I3RSY8_LOTJA R2R3MYB transcription factor; Found in the gene: LotjaGi1g1v0358300 LjG1.1_chr1 83289463 83290809 +
1 domain prediction
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LotjaGi1g1v0531900.1
n.a. Myb transcription factor-like protein; TAIR: AT5G41020.1 myb family transcription factor; Swiss-Prot: sp|Q9Y222|DMTF1_HUMAN Cyclin-D-binding Myb-like transcription factor 1; TrEMBL-Plants: tr|I1LYQ8|I1LYQ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0531900 LjG1.1_chr1 105902290 105905249 +
1 domain prediction
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LotjaGi1g1v0580600.1
n.a. MYB family protein; TAIR: AT5G02320.1 myb domain protein 3r-5; Swiss-Prot: sp|Q6R032|MB3R5_ARATH Transcription factor MYB3R-5; TrEMBL-Plants: tr|A0A0B2Q2F2|A0A0B2Q2F2_GLYSO Myb-related protein 3R-1; Found in the gene: LotjaGi1g1v0580600 LjG1.1_chr1 112007468 112015104 -
1 domain prediction
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LotjaGi1g1v0587600.1
n.a. Helicase/SANT-associated, DNA-binding protein, putative; TAIR: AT3G24880.1 Helicase/SANT-associated, DNA binding protein; Swiss-Prot: sp|F4J7T3|EAF1A_ARATH Chromatin modification-related protein EAF1 A; TrEMBL-Plants: tr|A0A0R0J4B4|A0A0R0J4B4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0587600 LjG1.1_chr1 112783276 112801071 -
1 domain prediction
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LotjaGi1g1v0587600.2
n.a. Helicase/SANT-associated, DNA-binding protein, putative; TAIR: AT3G24880.2 Helicase/SANT-associated, DNA binding protein; Swiss-Prot: sp|F4J7T3|EAF1A_ARATH Chromatin modification-related protein EAF1 A; TrEMBL-Plants: tr|A0A072UA52|A0A072UA52_MEDTR Helicase/SANT-associated, DNA-binding protein, putative; Found in the gene: LotjaGi1g1v0587600 LjG1.1_chr1 112784174 112801067 -
1 domain prediction
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LotjaGi1g1v0784800.1
n.a. Cell division cycle 5-related protein; TAIR: AT1G09770.1 cell division cycle 5; Swiss-Prot: sp|P92948|CDC5L_ARATH Cell division cycle 5-like protein; TrEMBL-Plants: tr|A0A072U4G1|A0A072U4G1_MEDTR Cell division control protein, putative; Found in the gene: LotjaGi1g1v0784800 LjG1.1_chr1 135736852 135742799 +
1 domain prediction
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LotjaGi1g1v0784800.2
n.a. Cell division cycle 5-related protein; TAIR: AT1G09770.1 cell division cycle 5; Swiss-Prot: sp|P92948|CDC5L_ARATH Cell division cycle 5-like protein; TrEMBL-Plants: tr|A0A151SZ47|A0A151SZ47_CAJCA Cell division cycle 5-related protein; Found in the gene: LotjaGi1g1v0784800 LjG1.1_chr1 135737103 135739134 +
1 domain prediction
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LotjaGi1g1v0784800.3
n.a. Cell division cycle 5-related protein; TAIR: AT1G09770.1 cell division cycle 5; Swiss-Prot: sp|P92948|CDC5L_ARATH Cell division cycle 5-like protein; TrEMBL-Plants: tr|A0A151SZ47|A0A151SZ47_CAJCA Cell division cycle 5-related protein; Found in the gene: LotjaGi1g1v0784800 LjG1.1_chr1 135737103 135739947 +
1 domain prediction
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LotjaGi2g1v0185900.1
n.a. Myb transcription factor; TAIR: AT1G17950.1 myb domain protein 52; Swiss-Prot: sp|Q6R0C4|MYB52_ARATH Transcription factor MYB52; TrEMBL-Plants: tr|G7KJN3|G7KJN3_MEDTR Myb transcription factor; Found in the gene: LotjaGi2g1v0185900 LjG1.1_chr2 61332917 61343737 +
1 domain prediction
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LotjaGi2g1v0199700.1
n.a. MYB family protein; TAIR: AT3G18100.1 myb domain protein 4r1; Swiss-Prot: sp|Q54NA6|MYBL_DICDI Myb-like protein L; TrEMBL-Plants: tr|K7L0S9|K7L0S9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0199700 LjG1.1_chr2 63677541 63691444 +
1 domain prediction
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LotjaGi2g1v0199700.2
n.a. MYB family protein; TAIR: AT3G18100.1 myb domain protein 4r1; Swiss-Prot: sp|Q54NA6|MYBL_DICDI Myb-like protein L; TrEMBL-Plants: tr|K7L0S9|K7L0S9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0199700 LjG1.1_chr2 63677601 63691497 +
1 domain prediction
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LotjaGi2g1v0199700.3
n.a. MYB family protein; TAIR: AT3G18100.1 myb domain protein 4r1; Swiss-Prot: sp|Q54NA6|MYBL_DICDI Myb-like protein L; TrEMBL-Plants: tr|K7L0S9|K7L0S9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0199700 LjG1.1_chr2 63677601 63691497 +
1 domain prediction
 –
LotjaGi2g1v0199700.4
n.a. MYB family protein; TAIR: AT3G18100.1 myb domain protein 4r1; Swiss-Prot: sp|Q54NA6|MYBL_DICDI Myb-like protein L; TrEMBL-Plants: tr|K7L0S9|K7L0S9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0199700 LjG1.1_chr2 63677629 63691810 +
1 domain prediction
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LotjaGi2g1v0199700.5
n.a. MYB family protein; TAIR: AT3G18100.1 myb domain protein 4r1; Swiss-Prot: sp|Q54NA6|MYBL_DICDI Myb-like protein L; TrEMBL-Plants: tr|K7L0S9|K7L0S9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0199700 LjG1.1_chr2 63677686 63691491 +
1 domain prediction
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LotjaGi2g1v0243800.1
n.a. MYB-related transcription factor; TAIR: AT4G18770.1 myb domain protein 98; Swiss-Prot: sp|Q9S7L2|MYB98_ARATH Transcription factor MYB98; TrEMBL-Plants: tr|A0A0L9VU20|A0A0L9VU20_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0243800 LjG1.1_chr2 70740487 70743593 -
1 domain prediction
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LotjaGi2g1v0306800.1
n.a. MYB family protein; TAIR: AT2G02820.2 myb domain protein 88; Swiss-Prot: sp|F4IRB4|MYB88_ARATH Transcription factor MYB124; TrEMBL-Plants: tr|A0A151TFM9|A0A151TFM9_CAJCA Myb-related protein B; Found in the gene: LotjaGi2g1v0306800 LjG1.1_chr2 78054294 78062031 +
1 domain prediction
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LotjaGi2g1v0306800.2
n.a. MYB family protein; TAIR: AT2G02820.2 myb domain protein 88; Swiss-Prot: sp|F4IRB4|MYB88_ARATH Transcription factor MYB124; TrEMBL-Plants: tr|A0A151TFM9|A0A151TFM9_CAJCA Myb-related protein B; Found in the gene: LotjaGi2g1v0306800 LjG1.1_chr2 78054294 78066276 +
1 domain prediction
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LotjaGi2g1v0306800.3
n.a. MYB family protein; TAIR: AT2G02820.2 myb domain protein 88; Swiss-Prot: sp|F4IRB4|MYB88_ARATH Transcription factor MYB124; TrEMBL-Plants: tr|A0A151TFM9|A0A151TFM9_CAJCA Myb-related protein B; Found in the gene: LotjaGi2g1v0306800 LjG1.1_chr2 78054327 78061736 +
1 domain prediction
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LotjaGi3g1v0055600.1
n.a. Myb transcription factor; TAIR: AT3G60460.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|A2WW87|GAM1_ORYSI Transcription factor GAMYB; TrEMBL-Plants: tr|A0A151S5I5|A0A151S5I5_CAJCA Transcription factor GAMYB; Found in the gene: LotjaGi3g1v0055600 LjG1.1_chr3 5851785 5853703 +
1 domain prediction
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LotjaGi3g1v0064500.1
n.a. Myb transcription factor; TAIR: AT3G60460.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|A2WW87|GAM1_ORYSI Transcription factor GAMYB; TrEMBL-Plants: tr|A0A0L9VU96|A0A0L9VU96_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0064500 LjG1.1_chr3 6820433 6822422 -
1 domain prediction
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LotjaGi3g1v0083100.1
n.a. Helicase/SANT-associated, DNA-binding protein, putative; TAIR: AT3G24880.2 Helicase/SANT-associated, DNA binding protein; Swiss-Prot: sp|F4J7T3|EAF1A_ARATH Chromatin modification-related protein EAF1 A; TrEMBL-Plants: tr|A0A0R0FX49|A0A0R0FX49_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0083100 LjG1.1_chr3 9235838 9256695 -
1 domain prediction
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LotjaGi3g1v0083100.2
n.a. Helicase/SANT-associated, DNA-binding protein, putative; TAIR: AT3G24880.2 Helicase/SANT-associated, DNA binding protein; Swiss-Prot: sp|F4J7T3|EAF1A_ARATH Chromatin modification-related protein EAF1 A; TrEMBL-Plants: tr|A0A0R0FX49|A0A0R0FX49_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0083100 LjG1.1_chr3 9236493 9256605 -
1 domain prediction
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LotjaGi3g1v0089500_LC.1
n.a. Cyclin-D-binding Myb-like transcription factor 1; TAIR: AT5G41020.1 myb family transcription factor; Swiss-Prot: sp|Q9Y222|DMTF1_HUMAN Cyclin-D-binding Myb-like transcription factor 1; TrEMBL-Plants: tr|I1LYQ8|I1LYQ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0089500_LC LjG1.1_chr3 10107724 10112890 +
1 domain prediction
 –