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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0019000 |
| Transcript ID | LotjaGi1g1v0019000.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb family transcription factor family protein; TAIR: AT5G41020.1 myb family transcription factor; Swiss-Prot: sp|Q9Y222|DMTF1_HUMAN Cyclin-D-binding Myb-like transcription factor 1; TrEMBL-Plants: tr|I1LYQ8|I1LYQ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0019000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2364922..2368728) extracted from Lotus japonicus Gifu genome v1.2.
GTCGAAAGTTCTCAACCTAGCTTATTGAATTAAAAACATTTGATATATATGACATTTGTGATGTACTGTAAAATAAAATT CCAACAATTTTAATTTAAATTTTACCAACACACTCTTCTCGAACTCTCTCAGTTCACGATTCAAAATCAAAGACACAGGG ATTAGGGTTTCAACATTCACGATTCTCTCACGCCGCCGCAATCGCCCGATAGCCACCGCCGGTAAGTTCCCCATCTCTTT CTCCGCCACTCACTATCTGCACATGTGAAGAATCGTTTTCTCTCTTTTTCCCATTCACGGATCGATCGTTAAGTTGAATC ATTCACCAGTTTTCGTCGTTTCATTTTCTCCGGTTTCATTGAATTCACAACTCGTTTTCTTCAATCATGGAAGATGTAGC GAATCCCTTTTTTCTTCACCGTTCATTTTTGTGAATAACGAATAATCTGACTGACTTTGATTAAGTGAAGCCTACCACAT AATTCTCATGAAACCTTACTCTTCAATTAGCTGTTTTTGCTCTGAAACCTTGCTGTATTCATTCATTTTTACATATTTTG GGTCTGCAGATTCATTACTGAAATTTTGGCTTTCACAAATGGATGTTTAGAACATGTTATGTGTTTTATAATTAGGAGAA TTTTGACTCTGTTGTTAGTTTGTTACAGTAATTTATGTGTACCAATTTTAATTTTAATTCTGTTGATATGGTGATCCTGT GAATCTACAGGCTGCAAGTTGTGATTCTGTTGTTATTGGAAAATAAGGTGAAATGACAGAGGAAAGTGATAGTCAAGGGA ACAAGTTGGAGAAGAAGAAACTACACAAGAAAAGTAAAAGGCCAAGAGACTGTGAAACCAGCAATGGAGGTGATGATTCG GTGGTCACGGAAGAAAGGCAAGGCAAGAAGATGAAGTTGGACAAGGTATTCAGCAAGGAAGATGGTAGAACTGAAGATGA AGATCATGACCAAGGTAAGAAGATGAAGAAGAAAAAGAAGCTGAGTGAAGAAACCAAACCAGATGACCGAGGCAAGGAGA TGAAAAAGAATAAGAAGGAGAAACTAATTGAAGAAAGCAAAAGTGAGGAAGAGTATAACAAGTTGAGAAGCAATGAAGGT GAAGATGGTGACCAAGGCAAGAAGAAGAAAAAGAATAAGAAGGAGAAACTAATTGAAGAAAGCAAAAGTGAGGAAGAGTA TAACCAGTTGAGAAGCAATGAAGGTGAAGATGGTGACCAAGGCAAGAAGATGAAGAAGAAAAAGAAGCTGAGTGACAAGA GCAAAAGTAAGAACAGTGAGTTTAATAGCAATGAAGGCGAAGACAATGACCGAGGCAAGGAGATGAAAAAGAATAAGAAG AAAAAATCAATTGAAGAAAGCAAAAGTGAGGAAGAGCATAACCAGTTGAGAAGCAATGAAGGTGAAGATGGTGACCAAGG CAAGAAGATGAAGAAAAAGAAGCTGAGTGACAAGAGCAAAAGTAAGAACAGTGAGTTTAATAGCAATGATGGCGGATCCT CTTTGGCTAGTGTTGAGGAAGGAGATGCTAAAGCTTGTGGCGATGTCACTGAAGTTGATGATCAAAGCAAGAAAAAGAAG ACAAAAAAGAAAGCCAAGGCAGGTACTGATGAATCTACTATTCCTGCAGCACATGGCGAGAAGATGAAGAAAAAGAAGCT GAGTGATAAGAGCAAAAGTAAGATCAGTGAGTTTAATAGCAATGAAGGTGATCCCTCTTTGGCTAGTGTTGAGGAAGGAG ATGCTAAAGCTTGTGGCGATGTCACTGAAGTTGATGATCAAAGCAAGAAAAAGAAGACAAAAAAGAAAGCCAAGGCAGGT ACTGATGAATCTACTATTCCTGCAGCACATGGCGAAACATCCAAACCCAAACGAGTAACTTTTTCTGATCAAGTGGAGGT TTATGGTGATCAAGTGGAGGTTTGTGGTGATCAAGTGGAGGTTTGTGGTGATGATGATTTAGTGCGTGGGAAAAGGTTTA CACCAGAAGAAGATGAGAAGATCAAAGAGGCTGTTTCTGACTATATAGAGTCTCATGGTTTGGGAGATGAAGGTCTAAAA ATGATTCTCCATTGCATGTCACATCCTGAAGTTAGAGGTTGTTGGAAGGAAATTGGAGAAGCCTTGCCTCATAGGCCTCA TCAGAGTGTTTATTATCGTGCTCATATTATTTATGAAAGGGATGAGGCGCGTAAGTGGACACCTGAAGAGCTCGATTTTT TACTCAAGGCCCAGGATCAACATGGAAGTGATTGGAAATTAATTGCAGAAGCTTTAAATAAACATCGTCTTCATGTGAAG GATACATGGCGGAGAATAAGACGAACCAATGCAAACACAGGACGTTGGTCCCAAGATGAGTATCAAAGGTTATTTGATTT AGTAAACAAAGATCTATGCGCAAGAGCTGCAGAGGATTGTAGAAAAAATAAACACGGTATGTTGCGAGATAATGTTAGTT GGGAGGCAATCAGTGATGAGTTTGGCTCTAGAGCTAGTGCATTGTGCTGCATGAAGTGGTATCAGCAATTAACATCACCA ATGGTTGCTGATGGTATATGGAGTGATACTGATGACTACCGCCTGGTGAATGCTTTATATGCTTTGGATGCTTGCTCCAT GGAGGAGGTAGACTGGGACAATCTGCTTGAGCACAGGTCTGGTGATGTATGTAGAAAACGATGGCACCAAATGGTCAGAA ATATTAGAGAATATGCGGGGAAGTCTTTTGCTGAGCAGGTGGAAATTCTTTCAAAGAGATATCGCCCTGACTTAGTGGAA GCAAGAGAGGCATTTGATAGCAAACCTGTGGTTGGTTGAGGTTATGATCCTGTAAGGTAATTTTCTTAGGGTCAAATAAT TTTGTAAAACTAGAATGTATGATGTTTTTGTGGGATTATCCAAACTTTCTTTGCAAATTATTGAAGGCTATGATGTTTTT GTGGGATTATCCAAACTTTTTCTGCAAATTAGTAACTGGAGTTTGTATTGGATGGAGGTTTATGTTGTAAAATGTAAAAT ATCAATCTTGTTTACTGTCATCTATTTGCATTTTCTCTTCTATAATAAAAGCAGGTTTCTGGTATGTTACTTTCAATCAC CGTTTTTGTTACTGATTTTTTGTCAAATTACAATTTTGGTCAAATTAATCAATTTTTCTCACTTCTGCTTTGATGACACC AACTGGACTCTTGTTTAATTTCTAATTACATTTCCCTTACGGCACGTTGATGTTTTTACTTGTAGATCTTCTTTTTTTTA AAGAATTATATGTATATTTACAAAGATATAATTTTATTTGGGCCGAGTATATTCTTTATCAGATCACTGATTAATTTGAA TCAACCTGATAATCATTAATCCGCATTTTAGGTTGTGAGTTATATCTCCATTGTAGTTACTTTATAGAAGCGCTTCTTGA AATAATTACAACTAAATAACAAAGTTTATACAAAAATCAATGAAAGCACTTTTTTTTTAGATTAGTGGTACGTAGAAGTT TTACTTGTTGCGAACAAGCGCATAGATCGACTGGCCTTAATTGTTCTGGTTTAAGGAGAGGAGCTTGAACATGCTTCTAG TGAGGATACATGTGGTTAAAACTAAAAAATATTTGATGTCAACTAAGGAATACTTATAACTAGTTTATGACCCGTGCCAC GGGGAGTTTAATTTCGAATTTTTGTTTAAATTTTTTGAATAAATATTTTATACTATTTTTATTAATTAGAGTTATGTGCT CTTTTTAATATTTTTTTGCACATTTGTGTTTGTCTCTTTTTTAGTGT
CDS sequence (LotjaGi1g1v0019000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGAGGAAAGTGATAGTCAAGGGAACAAGTTGGAGAAGAAGAAACTACACAAGAAAAGTAAAAGGCCAAGAGACTG TGAAACCAGCAATGGAGGTGATGATTCGGTGGTCACGGAAGAAAGGCAAGGCAAGAAGATGAAGTTGGACAAGGTATTCA GCAAGGAAGATGGTAGAACTGAAGATGAAGATCATGACCAAGGTAAGAAGATGAAGAAGAAAAAGAAGCTGAGTGAAGAA ACCAAACCAGATGACCGAGGCAAGGAGATGAAAAAGAATAAGAAGGAGAAACTAATTGAAGAAAGCAAAAGTGAGGAAGA GTATAACAAGTTGAGAAGCAATGAAGGTGAAGATGGTGACCAAGGCAAGAAGATGAAGAAGAAAAAGAAGCTGAGTGACA AGAGCAAAAGTAAGAACAGTGAGTTTAATAGCAATGAAGGCGAAGACAATGACCGAGGCAAGGAGATGAAAAAGAATAAG AAGAAAAAATCAATTGAAGAAAGCAAAAGTGAGGAAGAGCATAACCAGTTGAGAAGCAATGAAGGTGAAGATGGTGACCA AGGCAAGAAGATGAAGAAAAAGAAGCTGAGTGACAAGAGCAAAAGTAAGAACAGTGAGTTTAATAGCAATGATGGCGGAT CCTCTTTGGCTAGTGTTGAGGAAGGAGATGCTAAAGCTTGTGGCGATGTCACTGAAGTTGATGATCAAAGCAAGAAAAAG AAGACAAAAAAGAAAGCCAAGGCAGGTACTGATGAATCTACTATTCCTGCAGCACATGGCGAAACATCCAAACCCAAACG AGTAACTTTTTCTGATCAAGTGGAGGTTTATGGTGATCAAGTGGAGGTTTGTGGTGATCAAGTGGAGGTTTGTGGTGATG ATGATTTAGTGCGTGGGAAAAGGTTTACACCAGAAGAAGATGAGAAGATCAAAGAGGCTGTTTCTGACTATATAGAGTCT CATGGTTTGGGAGATGAAGGTCTAAAAATGATTCTCCATTGCATGTCACATCCTGAAGTTAGAGGTTGTTGGAAGGAAAT TGGAGAAGCCTTGCCTCATAGGCCTCATCAGAGTGTTTATTATCGTGCTCATATTATTTATGAAAGGGATGAGGCGCGTA AGTGGACACCTGAAGAGCTCGATTTTTTACTCAAGGCCCAGGATCAACATGGAAGTGATTGGAAATTAATTGCAGAAGCT TTAAATAAACATCGTCTTCATGTGAAGGATACATGGCGGAGAATAAGACGAACCAATGCAAACACAGGACGTTGGTCCCA AGATGAGTATCAAAGGTTATTTGATTTAGTAAACAAAGATCTATGCGCAAGAGCTGCAGAGGATTGTAGAAAAAATAAAC ACGGTATGTTGCGAGATAATGTTAGTTGGGAGGCAATCAGTGATGAGTTTGGCTCTAGAGCTAGTGCATTGTGCTGCATG AAGTGGTATCAGCAATTAACATCACCAATGGTTGCTGATGGTATATGGAGTGATACTGATGACTACCGCCTGGTGAATGC TTTATATGCTTTGGATGCTTGCTCCATGGAGGAGGTAGACTGGGACAATCTGCTTGAGCACAGGTCTGGTGATGTATGTA GAAAACGATGGCACCAAATGGTCAGAAATATTAGAGAATATGCGGGGAAGTCTTTTGCTGAGCAGGTGGAAATTCTTTCA AAGAGATATCGCCCTGACTTAGTGGAAGCAAGAGAGGCATTTGATAGCAAACCTGTGGTTGGTTGA
Protein sequence (LotjaGi1g1v0019000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEESDSQGNKLEKKKLHKKSKRPRDCETSNGGDDSVVTEERQGKKMKLDKVFSKEDGRTEDEDHDQGKKMKKKKKLSEE TKPDDRGKEMKKNKKEKLIEESKSEEEYNKLRSNEGEDGDQGKKMKKKKKLSDKSKSKNSEFNSNEGEDNDRGKEMKKNK KKKSIEESKSEEEHNQLRSNEGEDGDQGKKMKKKKLSDKSKSKNSEFNSNDGGSSLASVEEGDAKACGDVTEVDDQSKKK KTKKKAKAGTDESTIPAAHGETSKPKRVTFSDQVEVYGDQVEVCGDQVEVCGDDDLVRGKRFTPEEDEKIKEAVSDYIES HGLGDEGLKMILHCMSHPEVRGCWKEIGEALPHRPHQSVYYRAHIIYERDEARKWTPEELDFLLKAQDQHGSDWKLIAEA LNKHRLHVKDTWRRIRRTNANTGRWSQDEYQRLFDLVNKDLCARAAEDCRKNKHGMLRDNVSWEAISDEFGSRASALCCM KWYQQLTSPMVADGIWSDTDDYRLVNALYALDACSMEEVDWDNLLEHRSGDVCRKRWHQMVRNIREYAGKSFAEQVEILS KRYRPDLVEAREAFDSKPVVG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 266 | 266 | - | – | |
| PANTHER | 6 | 580 | 575 | 3.6E-178 | – | |
| MobiDBLite | 38 | 126 | 89 | - | – | |
| MobiDBLite | 134 | 205 | 72 | - | – | |
| MobiDBLite | 225 | 239 | 15 | - | – | |
| ProSiteProfiles | 294 | 362 | 69 | 4.391 | ||
| SMART | 298 | 369 | 72 | 1.2E-4 | ||
| ProSiteProfiles | 369 | 420 | 52 | 10.033 | ||
| SMART | 371 | 418 | 48 | 3.9E-4 | ||
| SUPERFAMILY | 373 | 429 | 57 | 5.11E-9 | ||
| CDD | 374 | 403 | 30 | 5.682E-4 | ||
| Pfam | 375 | 433 | 59 | 4.0E-12 | – | |
| Gene3D | 376 | 416 | 41 | 9.9E-11 | – | |
| ProSiteProfiles | 417 | 486 | 70 | 7.306 | ||
| SMART | 421 | 489 | 69 | 8.8 | ||
| Gene3D | 421 | 487 | 67 | 2.1E-5 | – | |
| SUPERFAMILY | 466 | 546 | 81 | 4.6E-5 | ||
| ProSiteProfiles | 488 | 541 | 54 | 7.445 | ||
| SMART | 492 | 543 | 52 | 63.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0019000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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