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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0019000 |
| Transcript ID | LotjaGi1g1v0019000.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb family transcription factor family protein; TAIR: AT5G41020.1 myb family transcription factor; Swiss-Prot: sp|Q9Y222|DMTF1_HUMAN Cyclin-D-binding Myb-like transcription factor 1; TrEMBL-Plants: tr|I1LYQ8|I1LYQ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0019000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2365487..2368675) extracted from Lotus japonicus Gifu genome v1.2.
ATTTGTGATGTACTGTAAAATAAAATTCCAACAATTTTAATTTAAATTTTACCAACACACTCTTCTCGAACTCTCTCAGT TCACGATTCAAAATCAAAGACACAGGGATTAGGGTTTCAACATTCACGATTCTCTCACGCCGCCGCAATCGCCCGATAGC CACCGCCGGTAAGTTCCCCATCTCTTTCTCCGCCACTCACTATCTGCACATGTGAAGAATCGTTTTCTCTCTTTTTCCCA TTCACGGATCGATCGTTAAGTTGAATCATTCACCAGTTTTCGTCGTTTCATTTTCTCCGGTTTCATTGAATTCACAACTC GTTTTCTTCAATCATGGAAGATGTAGCGAATCCCTTTTTTCTTCACCGTTCATTTTTGTGAATAACGAATAATCTGACTG ACTTTGATTAAGTGAAGCCTACCACATAATTCTCATGAAACCTTACTCTTCAATTAGCTGTTTTTGCTCTGAAACCTTGC TGTATTCATTCATTTTTACATATTTTGGGTCTGCAGATTCATTACTGAAATTTTGGCTTTCACAAATGGATGTTTAGAAC ATGTTATGTGTTTTATAATTAGGAGAATTTTGACTCTGTTGTTAGTTTGTTACAGTAATTTATGTGTACCAATTTTAATT TTAATTCTGTTGATATGGTGATCCTGTGAATCTACAGGCTGCAAGTTGTGATTCTGTTGTTATTGGAAAATAAGGTGAAA TGACAGAGGAAAGTGATAGTCAAGGGAACAAGTTGGAGAAGAAGAAACTACACAAGAAAAGTAAAAGGCCAAGAGACTGT GAAACCAGCAATGGAGGTGATGATTCGGTGGTCACGGAAGAAAGGCAAGGCAAGAAGATGAAGTTGGACAAGGTATTCAG CAAGGAAGATGGTAGAACTGAAGATGAAGATCATGACCAAGGTAAGAAGATGAAGAAGAAAAAGAAGCTGAGTGAAGAAA CCAAACCAGATGACCGAGGCAAGGAGATGAAAAAGAATAAGAAGGAGAAACTAATTGAAGAAAGCAAAAGTGAGGAAGAG TATAACAAGTTGAGAAGCAATGAAGGTGAAGATGGTGACCAAGGCAAGAAGAAGAAAAAGAATAAGAAGGAGAAACTAAT TGAAGAAAGCAAAAGTGAGGAAGAGTATAACCAGTTGAGAAGCAATGAAGGTGAAGATGGTGACCAAGGCAAGAAGATGA AGAAGAAAAAGAAGCTGAGTGACAAGAGCAAAAGTAAGAACAGTGAGTTTAATAGCAATGAAGGCGAAGACAATGACCGA GGCAAGGAGATGAAAAAGAATAAGAAGAAAAAATCAATTGAAGAAAGCAAAAGTGAGGAAGAGCATAACCAGTTGAGAAG CAATGAAGGTGAAGATGGTGACCAAGGCAAGAAGATGAAGAAAAAGAAGCTGAGTGACAAGAGCAAAAGTAAGAACAGTG AGTTTAATAGCAATGATGGCGGATCCTCTTTGGCTAGTGTTGAGGAAGGAGATGCTAAAGCTTGTGGCGATGTCACTGAA GTTGATGATCAAAGCAAGAAAAAGAAGACAAAAAAGAAAGCCAAGGCAGGTACTGATGAATCTACTATTCCTGCAGCACA TGGCGAGAAGATGAAGAAAAAGAAGCTGAGTGATAAGAGCAAAAGTAAGATCAGTGAGTTTAATAGCAATGAAGGTGATC CCTCTTTGGCTAGTGTTGAGGAAGGAGATGCTAAAGCTTGTGGCGATGTCACTGAAGTTGATGATCAAAGCAAGAAAAAG AAGACAAAAAAGAAAGCCAAGGCAGGTACTGATGAATCTACTATTCCTGCAGCACATGGCGAAACATCCAAACCCAAACG AGTAACTTTTTCTGATCAAGTGGAGGTTTATGGTGATCAAGTGGAGGTTTGTGGTGATCAAGTGGAGGTTTGTGGTGATG ATGATTTAGTGCGTGGGAAAAGGTTTACACCAGAAGAAGATGAGAAGATCAAAGAGGCTGTTTCTGACTATATAGAGTCT CATGGTTTGGGAGATGAAGGTCTAAAAATGATTCTCCATTGCATGTCACATCCTGAAGTTAGAGGTTGTTGGAAGGAAAT TGGAGAAGCCTTGCCTCATAGGCCTCATCAGAGTGTTTATTATCGTGCTCATATTATTTATGAAAGGGATGAGGCGCGTA AGTGGACACCTGAAGAGCTCGATTTTTTACTCAAGGCCCAGGATCAACATGGAAGTGATTGGAAATTAATTGCAGAAGCT TTAAATAAACATCGTCTTCATGTGAAGGATACATGGCGGAGAATAAGACGAACCAATGCAAACACAGGACGTTGGTCCCA AGATGAGTATCAAAGGTTATTTGATTTAGTAAACAAAGATCTATGCGCAAGAGCTGCAGAGGATTGTAGAAAAAATAAAC ACGGTATGTTGCGAGATAATGTTAGTTGGGAGGCAATCAGTGATGAGTTTGGCTCTAGAGCTAGTGCATTGTGCTGCATG AAGTGGTATCAGCAATTAACATCACCAATGGTTGCTGATGGTATATGGAGTGATACTGATGACTACCGCCTGGTGAATGC TTTATATGCTTTGGATGCTTGCTCCATGGAGGAGGTAGACTGGGACAATCTGCTTGAGCACAGGTCTGGTGATGTATGTA GAAAACGATGGCACCAAATGGTCAGAAATATTAGAGAATATGCGGGGAAGTCTTTTGCTGAGCAGGTGGAAATTCTTTCA AAGAGATATCGCCCTGACTTAGTGGAAGCAAGAGAGGCATTTGATAGCAAACCTGTGGTTGGTTGAGGTTATGATCCTGT AAGGTAATTTTCTTAGGGTCAAATAATTTTGTAAAACTAGAATGTATGATGTTTTTGTGGGATTATCCAAACTTTCTTTG CAAATTATTGAAGGCTATGATGTTTTTGTGGGATTATCCAAACTTTTTCTGCAAATTAGTAACTGGAGTTTGTATTGGAT GGAGGTTTATGTTGTAAAATGTAAAATATCAATCTTGTTTACTGTCATCTATTTGCATTTTCTCTTCTATAATAAAAGCA GGTTTCTGGTATGTTACTTTCAATCACCGTTTTTGTTACTGATTTTTTGTCAAATTACAATTTTGGTCAAATTAATCAAT TTTTCTCACTTCTGCTTTGATGACACCAACTGGACTCTTGTTTAATTTCTAATTACATTTCCCTTACGG
CDS sequence (LotjaGi1g1v0019000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGAGGAAAGTGATAGTCAAGGGAACAAGTTGGAGAAGAAGAAACTACACAAGAAAAGTAAAAGGCCAAGAGACTG TGAAACCAGCAATGGAGGTGATGATTCGGTGGTCACGGAAGAAAGGCAAGGCAAGAAGATGAAGTTGGACAAGGTATTCA GCAAGGAAGATGGTAGAACTGAAGATGAAGATCATGACCAAGGTAAGAAGATGAAGAAGAAAAAGAAGCTGAGTGAAGAA ACCAAACCAGATGACCGAGGCAAGGAGATGAAAAAGAATAAGAAGGAGAAACTAATTGAAGAAAGCAAAAGTGAGGAAGA GTATAACAAGTTGAGAAGCAATGAAGGTGAAGATGGTGACCAAGGCAAGAAGATGAAGAAAAAGAAGCTGAGTGACAAGA GCAAAAGTAAGAACAGTGAGTTTAATAGCAATGATGGCGGATCCTCTTTGGCTAGTGTTGAGGAAGGAGATGCTAAAGCT TGTGGCGATGTCACTGAAGTTGATGATCAAAGCAAGAAAAAGAAGACAAAAAAGAAAGCCAAGGCAGGTACTGATGAATC TACTATTCCTGCAGCACATGGCGAGAAGATGAAGAAAAAGAAGCTGAGTGATAAGAGCAAAAGTAAGATCAGTGAGTTTA ATAGCAATGAAGGTGATCCCTCTTTGGCTAGTGTTGAGGAAGGAGATGCTAAAGCTTGTGGCGATGTCACTGAAGTTGAT GATCAAAGCAAGAAAAAGAAGACAAAAAAGAAAGCCAAGGCAGGTACTGATGAATCTACTATTCCTGCAGCACATGGCGA AACATCCAAACCCAAACGAGTAACTTTTTCTGATCAAGTGGAGGTTTATGGTGATCAAGTGGAGGTTTGTGGTGATCAAG TGGAGGTTTGTGGTGATGATGATTTAGTGCGTGGGAAAAGGTTTACACCAGAAGAAGATGAGAAGATCAAAGAGGCTGTT TCTGACTATATAGAGTCTCATGGTTTGGGAGATGAAGGTCTAAAAATGATTCTCCATTGCATGTCACATCCTGAAGTTAG AGGTTGTTGGAAGGAAATTGGAGAAGCCTTGCCTCATAGGCCTCATCAGAGTGTTTATTATCGTGCTCATATTATTTATG AAAGGGATGAGGCGCGTAAGTGGACACCTGAAGAGCTCGATTTTTTACTCAAGGCCCAGGATCAACATGGAAGTGATTGG AAATTAATTGCAGAAGCTTTAAATAAACATCGTCTTCATGTGAAGGATACATGGCGGAGAATAAGACGAACCAATGCAAA CACAGGACGTTGGTCCCAAGATGAGTATCAAAGGTTATTTGATTTAGTAAACAAAGATCTATGCGCAAGAGCTGCAGAGG ATTGTAGAAAAAATAAACACGGTATGTTGCGAGATAATGTTAGTTGGGAGGCAATCAGTGATGAGTTTGGCTCTAGAGCT AGTGCATTGTGCTGCATGAAGTGGTATCAGCAATTAACATCACCAATGGTTGCTGATGGTATATGGAGTGATACTGATGA CTACCGCCTGGTGAATGCTTTATATGCTTTGGATGCTTGCTCCATGGAGGAGGTAGACTGGGACAATCTGCTTGAGCACA GGTCTGGTGATGTATGTAGAAAACGATGGCACCAAATGGTCAGAAATATTAGAGAATATGCGGGGAAGTCTTTTGCTGAG CAGGTGGAAATTCTTTCAAAGAGATATCGCCCTGACTTAGTGGAAGCAAGAGAGGCATTTGATAGCAAACCTGTGGTTGG TTGA
Protein sequence (LotjaGi1g1v0019000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEESDSQGNKLEKKKLHKKSKRPRDCETSNGGDDSVVTEERQGKKMKLDKVFSKEDGRTEDEDHDQGKKMKKKKKLSEE TKPDDRGKEMKKNKKEKLIEESKSEEEYNKLRSNEGEDGDQGKKMKKKKLSDKSKSKNSEFNSNDGGSSLASVEEGDAKA CGDVTEVDDQSKKKKTKKKAKAGTDESTIPAAHGEKMKKKKLSDKSKSKISEFNSNEGDPSLASVEEGDAKACGDVTEVD DQSKKKKTKKKAKAGTDESTIPAAHGETSKPKRVTFSDQVEVYGDQVEVCGDQVEVCGDDDLVRGKRFTPEEDEKIKEAV SDYIESHGLGDEGLKMILHCMSHPEVRGCWKEIGEALPHRPHQSVYYRAHIIYERDEARKWTPEELDFLLKAQDQHGSDW KLIAEALNKHRLHVKDTWRRIRRTNANTGRWSQDEYQRLFDLVNKDLCARAAEDCRKNKHGMLRDNVSWEAISDEFGSRA SALCCMKWYQQLTSPMVADGIWSDTDDYRLVNALYALDACSMEEVDWDNLLEHRSGDVCRKRWHQMVRNIREYAGKSFAE QVEILSKRYRPDLVEAREAFDSKPVVG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 270 | 270 | - | – | |
| PANTHER | 6 | 586 | 581 | 4.0E-177 | – | |
| PANTHER | 6 | 586 | 581 | 4.0E-177 | – | |
| MobiDBLite | 38 | 139 | 102 | - | – | |
| MobiDBLite | 159 | 173 | 15 | - | – | |
| MobiDBLite | 191 | 212 | 22 | - | – | |
| MobiDBLite | 231 | 245 | 15 | - | – | |
| ProSiteProfiles | 300 | 368 | 69 | 4.391 | ||
| SMART | 304 | 375 | 72 | 1.2E-4 | ||
| ProSiteProfiles | 375 | 426 | 52 | 10.033 | ||
| SMART | 377 | 424 | 48 | 3.9E-4 | ||
| SUPERFAMILY | 379 | 435 | 57 | 5.25E-9 | ||
| CDD | 380 | 409 | 30 | 4.06619E-4 | ||
| Pfam | 381 | 439 | 59 | 4.0E-12 | – | |
| Gene3D | 382 | 422 | 41 | 1.0E-10 | – | |
| ProSiteProfiles | 423 | 492 | 70 | 7.306 | ||
| Gene3D | 427 | 493 | 67 | 2.1E-5 | – | |
| SMART | 427 | 495 | 69 | 8.8 | ||
| SUPERFAMILY | 472 | 552 | 81 | 5.01E-5 | ||
| ProSiteProfiles | 494 | 547 | 54 | 7.445 | ||
| SMART | 498 | 549 | 52 | 63.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0019000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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